Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1373

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1371 and Rru_A1372 overlap by 4 nucleotidesRru_A1372 and Rru_A1373 are separated by 6 nucleotidesRru_A1373 and Rru_A1374 are separated by 29 nucleotidesRru_A1374 and Rru_A1375 are separated by 11 nucleotides Rru_A1371: Rru_A1371 - hypothetical protein (NCBI), at 1,614,858 to 1,615,130 _A1371 Rru_A1372: Rru_A1372 - hypothetical protein (NCBI), at 1,615,127 to 1,615,981 _A1372 Rru_A1373: Rru_A1373 - Peptidase C14, caspase catalytic subunit p20 (NCBI), at 1,615,988 to 1,616,905 _A1373 Rru_A1374: Rru_A1374 - Peptidase C14, caspase catalytic subunit p20 (NCBI), at 1,616,935 to 1,617,840 _A1374 Rru_A1375: Rru_A1375 - hypothetical protein (NCBI), at 1,617,852 to 1,620,059 _A1375 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -1 0 1 2 3at 1615.449 kb on + strand, within Rru_A1372at 1615.449 kb on + strand, within Rru_A1372at 1615.449 kb on + strand, within Rru_A1372at 1615.450 kb on - strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.454 kb on + strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.455 kb on - strand, within Rru_A1372at 1615.805 kb on - strand, within Rru_A1372at 1616.046 kb on + strandat 1616.047 kb on - strandat 1616.479 kb on + strand, within Rru_A1373at 1616.479 kb on + strand, within Rru_A1373at 1616.479 kb on + strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.480 kb on - strand, within Rru_A1373at 1616.545 kb on - strand, within Rru_A1373at 1616.586 kb on + strand, within Rru_A1373at 1616.868 kb on + strandat 1616.868 kb on + strandat 1616.895 kb on + strandat 1616.896 kb on - strandat 1616.919 kb on + strandat 1616.936 kb on + strandat 1617.108 kb on + strand, within Rru_A1374at 1617.277 kb on - strand, within Rru_A1374at 1617.408 kb on - strand, within Rru_A1374at 1617.429 kb on + strand, within Rru_A1374at 1617.429 kb on + strand, within Rru_A1374at 1617.429 kb on + strand, within Rru_A1374at 1617.429 kb on + strand, within Rru_A1374at 1617.430 kb on - strand, within Rru_A1374at 1617.430 kb on - strand, within Rru_A1374at 1617.430 kb on - strand, within Rru_A1374at 1617.593 kb on + strand, within Rru_A1374at 1617.593 kb on + strand, within Rru_A1374at 1617.594 kb on - strand, within Rru_A1374at 1617.694 kb on - strand, within Rru_A1374at 1617.694 kb on - strand, within Rru_A1374

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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1,615,449 + Rru_A1372 0.38 +0.3
1,615,449 + Rru_A1372 0.38 -0.2
1,615,449 + Rru_A1372 0.38 -0.9
1,615,450 - Rru_A1372 0.38 -0.0
1,615,454 + Rru_A1372 0.38 +0.4
1,615,454 + Rru_A1372 0.38 +0.3
1,615,454 + Rru_A1372 0.38 +0.0
1,615,454 + Rru_A1372 0.38 +1.6
1,615,454 + Rru_A1372 0.38 +0.3
1,615,455 - Rru_A1372 0.38 +0.2
1,615,455 - Rru_A1372 0.38 +0.6
1,615,455 - Rru_A1372 0.38 +0.5
1,615,455 - Rru_A1372 0.38 +0.4
1,615,455 - Rru_A1372 0.38 +0.0
1,615,455 - Rru_A1372 0.38 -0.1
1,615,805 - Rru_A1372 0.79 -0.5
1,616,046 + -0.1
1,616,047 - -0.1
1,616,479 + Rru_A1373 0.53 -0.1
1,616,479 + Rru_A1373 0.53 +0.5
1,616,479 + Rru_A1373 0.53 +0.5
1,616,480 - Rru_A1373 0.54 -1.0
1,616,480 - Rru_A1373 0.54 +1.6
1,616,480 - Rru_A1373 0.54 -0.2
1,616,480 - Rru_A1373 0.54 -1.0
1,616,545 - Rru_A1373 0.61 +2.8
1,616,586 + Rru_A1373 0.65 -1.6
1,616,868 + +0.8
1,616,868 + +0.4
1,616,895 + +0.5
1,616,896 - +0.2
1,616,919 + +0.5
1,616,936 + +0.5
1,617,108 + Rru_A1374 0.19 +0.1
1,617,277 - Rru_A1374 0.38 -0.5
1,617,408 - Rru_A1374 0.52 +0.5
1,617,429 + Rru_A1374 0.55 +1.2
1,617,429 + Rru_A1374 0.55 +0.1
1,617,429 + Rru_A1374 0.55 +0.3
1,617,429 + Rru_A1374 0.55 +0.1
1,617,430 - Rru_A1374 0.55 -0.4
1,617,430 - Rru_A1374 0.55 -0.6
1,617,430 - Rru_A1374 0.55 +0.5
1,617,593 + Rru_A1374 0.73 +0.5
1,617,593 + Rru_A1374 0.73 +0.4
1,617,594 - Rru_A1374 0.73 +0.1
1,617,694 - Rru_A1374 0.84 -0.8
1,617,694 - Rru_A1374 0.84 -0.5

Or see this region's nucleotide sequence