Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1118

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1117 and Rru_A1118 are separated by 8 nucleotidesRru_A1118 and Rru_A1119 are separated by 385 nucleotides Rru_A1117: Rru_A1117 - Secretion protein HlyD (NCBI), at 1,312,016 to 1,313,119 _A1117 Rru_A1118: Rru_A1118 - Hydrophobe/amphiphile efflux-1 HAE1 (NCBI), at 1,313,128 to 1,316,286 _A1118 Rru_A1119: Rru_A1119 - NnrS (NCBI), at 1,316,672 to 1,317,862 _A1119 Position (kb) 1313 1314 1315 1316 1317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1312.156 kb on + strand, within Rru_A1117at 1312.156 kb on + strand, within Rru_A1117at 1312.283 kb on - strand, within Rru_A1117at 1312.318 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.676 kb on + strand, within Rru_A1117at 1312.677 kb on - strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1313.117 kb on + strandat 1313.138 kb on + strandat 1313.139 kb on - strandat 1313.143 kb on - strandat 1313.263 kb on + strandat 1313.263 kb on + strandat 1313.272 kb on + strandat 1313.273 kb on - strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.333 kb on + strandat 1313.333 kb on + strandat 1313.334 kb on - strandat 1313.334 kb on - strandat 1313.334 kb on - strandat 1313.356 kb on + strandat 1313.356 kb on + strandat 1313.508 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.596 kb on + strand, within Rru_A1118at 1313.596 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.611 kb on - strand, within Rru_A1118at 1313.611 kb on - strand, within Rru_A1118at 1313.624 kb on + strand, within Rru_A1118at 1313.625 kb on - strand, within Rru_A1118at 1313.734 kb on - strand, within Rru_A1118at 1313.784 kb on - strand, within Rru_A1118at 1313.951 kb on - strand, within Rru_A1118at 1313.951 kb on - strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.107 kb on - strand, within Rru_A1118at 1314.107 kb on - strand, within Rru_A1118at 1314.278 kb on + strand, within Rru_A1118at 1314.278 kb on + strand, within Rru_A1118at 1314.423 kb on + strand, within Rru_A1118at 1314.423 kb on + strand, within Rru_A1118at 1314.423 kb on + strand, within Rru_A1118at 1314.442 kb on - strand, within Rru_A1118at 1314.442 kb on - strand, within Rru_A1118at 1314.527 kb on - strand, within Rru_A1118at 1314.527 kb on - strand, within Rru_A1118at 1314.755 kb on - strand, within Rru_A1118at 1314.781 kb on + strand, within Rru_A1118at 1314.782 kb on - strand, within Rru_A1118at 1314.782 kb on - strand, within Rru_A1118at 1314.832 kb on + strand, within Rru_A1118at 1314.832 kb on + strand, within Rru_A1118at 1314.832 kb on + strand, within Rru_A1118at 1314.832 kb on + strand, within Rru_A1118at 1314.833 kb on - strand, within Rru_A1118at 1314.833 kb on - strand, within Rru_A1118at 1315.197 kb on + strand, within Rru_A1118at 1315.198 kb on - strand, within Rru_A1118at 1315.261 kb on - strand, within Rru_A1118at 1315.261 kb on - strand, within Rru_A1118at 1315.344 kb on + strand, within Rru_A1118at 1315.344 kb on + strand, within Rru_A1118at 1315.344 kb on + strand, within Rru_A1118at 1315.345 kb on - strand, within Rru_A1118at 1315.381 kb on + strand, within Rru_A1118at 1315.381 kb on + strand, within Rru_A1118at 1315.381 kb on + strand, within Rru_A1118at 1315.382 kb on - strand, within Rru_A1118at 1315.383 kb on + strand, within Rru_A1118at 1315.383 kb on + strand, within Rru_A1118at 1315.383 kb on + strand, within Rru_A1118at 1315.383 kb on + strand, within Rru_A1118at 1315.384 kb on - strand, within Rru_A1118at 1315.384 kb on - strand, within Rru_A1118at 1315.384 kb on - strand, within Rru_A1118at 1315.393 kb on + strand, within Rru_A1118at 1315.564 kb on + strand, within Rru_A1118at 1315.565 kb on - strand, within Rru_A1118at 1315.565 kb on - strand, within Rru_A1118at 1315.565 kb on - strand, within Rru_A1118at 1315.783 kb on + strand, within Rru_A1118at 1315.784 kb on - strand, within Rru_A1118at 1315.885 kb on + strand, within Rru_A1118at 1315.885 kb on + strand, within Rru_A1118at 1315.885 kb on + strand, within Rru_A1118at 1315.885 kb on + strand, within Rru_A1118at 1315.885 kb on + strand, within Rru_A1118at 1315.886 kb on - strand, within Rru_A1118at 1315.886 kb on - strand, within Rru_A1118at 1315.886 kb on - strand, within Rru_A1118at 1315.963 kb on + strand, within Rru_A1118at 1315.964 kb on - strand, within Rru_A1118at 1315.964 kb on - strand, within Rru_A1118at 1316.138 kb on + strandat 1316.138 kb on + strandat 1316.139 kb on - strandat 1316.139 kb on - strandat 1316.139 kb on - strandat 1316.139 kb on - strandat 1316.351 kb on - strandat 1316.383 kb on + strandat 1316.384 kb on - strandat 1316.494 kb on - strandat 1316.511 kb on + strandat 1316.511 kb on + strandat 1316.554 kb on + strandat 1316.594 kb on + strandat 1316.594 kb on + strandat 1316.595 kb on - strandat 1316.599 kb on + strandat 1316.599 kb on + strandat 1316.600 kb on - strandat 1316.600 kb on - strandat 1316.600 kb on - strandat 1316.634 kb on + strandat 1316.774 kb on + strandat 1316.775 kb on - strandat 1316.775 kb on - strandat 1317.024 kb on + strand, within Rru_A1119at 1317.024 kb on + strand, within Rru_A1119at 1317.024 kb on + strand, within Rru_A1119at 1317.025 kb on - strand, within Rru_A1119at 1317.025 kb on - strand, within Rru_A1119at 1317.234 kb on + strand, within Rru_A1119at 1317.234 kb on + strand, within Rru_A1119at 1317.234 kb on + strand, within Rru_A1119at 1317.283 kb on + strand, within Rru_A1119

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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1,312,156 + Rru_A1117 0.13 +0.4
1,312,156 + Rru_A1117 0.13 -0.6
1,312,283 - Rru_A1117 0.24 -0.1
1,312,318 + Rru_A1117 0.27 -0.2
1,312,340 + Rru_A1117 0.29 -1.3
1,312,340 + Rru_A1117 0.29 +0.0
1,312,431 - Rru_A1117 0.38 -0.2
1,312,431 - Rru_A1117 0.38 -0.5
1,312,431 - Rru_A1117 0.38 -0.4
1,312,432 + Rru_A1117 0.38 +0.0
1,312,432 + Rru_A1117 0.38 -1.4
1,312,432 + Rru_A1117 0.38 -1.5
1,312,433 - Rru_A1117 0.38 -0.1
1,312,433 - Rru_A1117 0.38 -1.3
1,312,676 + Rru_A1117 0.60 -0.6
1,312,677 - Rru_A1117 0.60 -0.0
1,312,790 + Rru_A1117 0.70 -3.0
1,312,790 + Rru_A1117 0.70 -0.2
1,312,790 + Rru_A1117 0.70 -0.0
1,312,790 + Rru_A1117 0.70 -0.2
1,312,790 + Rru_A1117 0.70 -0.4
1,312,790 + Rru_A1117 0.70 +0.5
1,312,790 + Rru_A1117 0.70 +0.0
1,312,790 + Rru_A1117 0.70 -0.3
1,312,790 + Rru_A1117 0.70 +0.0
1,312,790 + Rru_A1117 0.70 -0.9
1,312,791 - Rru_A1117 0.70 -0.8
1,312,791 - Rru_A1117 0.70 +0.5
1,312,791 - Rru_A1117 0.70 -0.4
1,312,791 - Rru_A1117 0.70 -0.7
1,312,791 - Rru_A1117 0.70 -0.8
1,312,791 - Rru_A1117 0.70 -2.1
1,312,791 - Rru_A1117 0.70 +0.5
1,312,791 - Rru_A1117 0.70 -0.6
1,312,791 - Rru_A1117 0.70 -0.2
1,312,886 + Rru_A1117 0.79 -1.0
1,312,886 + Rru_A1117 0.79 -0.7
1,312,886 + Rru_A1117 0.79 +0.9
1,312,886 + Rru_A1117 0.79 +0.2
1,312,887 - Rru_A1117 0.79 +0.0
1,312,887 - Rru_A1117 0.79 -1.4
1,312,887 - Rru_A1117 0.79 -0.7
1,313,117 + -1.5
1,313,138 + -0.4
1,313,139 - +0.1
1,313,143 - -0.7
1,313,263 + -1.2
1,313,263 + -0.6
1,313,272 + +0.3
1,313,273 - +0.5
1,313,299 + +0.5
1,313,299 + -0.1
1,313,299 + +0.4
1,313,299 + +0.5
1,313,299 + -0.0
1,313,300 - +0.2
1,313,300 - +0.4
1,313,300 - -0.1
1,313,300 - +0.1
1,313,333 + +0.7
1,313,333 + +1.8
1,313,334 - +0.5
1,313,334 - -0.5
1,313,334 - -0.4
1,313,356 + -0.6
1,313,356 + -0.1
1,313,508 + Rru_A1118 0.12 -0.2
1,313,543 + Rru_A1118 0.13 -0.6
1,313,543 + Rru_A1118 0.13 -0.2
1,313,543 + Rru_A1118 0.13 -0.3
1,313,544 - Rru_A1118 0.13 -0.4
1,313,544 - Rru_A1118 0.13 -0.1
1,313,544 - Rru_A1118 0.13 -0.5
1,313,596 + Rru_A1118 0.15 -0.6
1,313,596 + Rru_A1118 0.15 -1.2
1,313,610 + Rru_A1118 0.15 -0.2
1,313,610 + Rru_A1118 0.15 -0.2
1,313,610 + Rru_A1118 0.15 -0.3
1,313,610 + Rru_A1118 0.15 -1.0
1,313,611 - Rru_A1118 0.15 -0.8
1,313,611 - Rru_A1118 0.15 +0.1
1,313,624 + Rru_A1118 0.16 -0.4
1,313,625 - Rru_A1118 0.16 +0.3
1,313,734 - Rru_A1118 0.19 +0.5
1,313,784 - Rru_A1118 0.21 -0.1
1,313,951 - Rru_A1118 0.26 -0.2
1,313,951 - Rru_A1118 0.26 -0.2
1,314,094 + Rru_A1118 0.31 +0.2
1,314,094 + Rru_A1118 0.31 -0.6
1,314,094 + Rru_A1118 0.31 -0.2
1,314,094 + Rru_A1118 0.31 -0.1
1,314,095 - Rru_A1118 0.31 -0.3
1,314,095 - Rru_A1118 0.31 +0.4
1,314,095 - Rru_A1118 0.31 -0.7
1,314,095 - Rru_A1118 0.31 -0.0
1,314,106 + Rru_A1118 0.31 -0.5
1,314,106 + Rru_A1118 0.31 +0.2
1,314,106 + Rru_A1118 0.31 +0.2
1,314,106 + Rru_A1118 0.31 +0.5
1,314,106 + Rru_A1118 0.31 +0.6
1,314,107 - Rru_A1118 0.31 +0.5
1,314,107 - Rru_A1118 0.31 -0.6
1,314,278 + Rru_A1118 0.36 +0.1
1,314,278 + Rru_A1118 0.36 -0.6
1,314,423 + Rru_A1118 0.41 +1.0
1,314,423 + Rru_A1118 0.41 -0.0
1,314,423 + Rru_A1118 0.41 +0.1
1,314,442 - Rru_A1118 0.42 +0.4
1,314,442 - Rru_A1118 0.42 -0.6
1,314,527 - Rru_A1118 0.44 +0.1
1,314,527 - Rru_A1118 0.44 -0.3
1,314,755 - Rru_A1118 0.52 -1.4
1,314,781 + Rru_A1118 0.52 -1.0
1,314,782 - Rru_A1118 0.52 -0.0
1,314,782 - Rru_A1118 0.52 +0.0
1,314,832 + Rru_A1118 0.54 -0.3
1,314,832 + Rru_A1118 0.54 -0.0
1,314,832 + Rru_A1118 0.54 -1.0
1,314,832 + Rru_A1118 0.54 -0.1
1,314,833 - Rru_A1118 0.54 +0.1
1,314,833 - Rru_A1118 0.54 -0.4
1,315,197 + Rru_A1118 0.65 +0.2
1,315,198 - Rru_A1118 0.66 -0.4
1,315,261 - Rru_A1118 0.68 +0.0
1,315,261 - Rru_A1118 0.68 +0.4
1,315,344 + Rru_A1118 0.70 -0.5
1,315,344 + Rru_A1118 0.70 -0.2
1,315,344 + Rru_A1118 0.70 +0.3
1,315,345 - Rru_A1118 0.70 +0.2
1,315,381 + Rru_A1118 0.71 +0.9
1,315,381 + Rru_A1118 0.71 -1.2
1,315,381 + Rru_A1118 0.71 -0.8
1,315,382 - Rru_A1118 0.71 -1.1
1,315,383 + Rru_A1118 0.71 -0.2
1,315,383 + Rru_A1118 0.71 +0.5
1,315,383 + Rru_A1118 0.71 -0.1
1,315,383 + Rru_A1118 0.71 -1.3
1,315,384 - Rru_A1118 0.71 -0.4
1,315,384 - Rru_A1118 0.71 +0.7
1,315,384 - Rru_A1118 0.71 -0.3
1,315,393 + Rru_A1118 0.72 +0.0
1,315,564 + Rru_A1118 0.77 -0.6
1,315,565 - Rru_A1118 0.77 -0.4
1,315,565 - Rru_A1118 0.77 -0.4
1,315,565 - Rru_A1118 0.77 -0.1
1,315,783 + Rru_A1118 0.84 -0.5
1,315,784 - Rru_A1118 0.84 -0.3
1,315,885 + Rru_A1118 0.87 -1.3
1,315,885 + Rru_A1118 0.87 -0.4
1,315,885 + Rru_A1118 0.87 +0.5
1,315,885 + Rru_A1118 0.87 -0.3
1,315,885 + Rru_A1118 0.87 -0.7
1,315,886 - Rru_A1118 0.87 -0.1
1,315,886 - Rru_A1118 0.87 -1.2
1,315,886 - Rru_A1118 0.87 -0.3
1,315,963 + Rru_A1118 0.90 -0.6
1,315,964 - Rru_A1118 0.90 +0.5
1,315,964 - Rru_A1118 0.90 -0.4
1,316,138 + -0.3
1,316,138 + -1.8
1,316,139 - -0.3
1,316,139 - +0.5
1,316,139 - -0.1
1,316,139 - -1.7
1,316,351 - +0.3
1,316,383 + -0.1
1,316,384 - -0.4
1,316,494 - +0.2
1,316,511 + -0.4
1,316,511 + +0.5
1,316,554 + -0.2
1,316,594 + +0.5
1,316,594 + +1.3
1,316,595 - -0.0
1,316,599 + -1.1
1,316,599 + -0.7
1,316,600 - +0.5
1,316,600 - +0.7
1,316,600 - +0.2
1,316,634 + +0.4
1,316,774 + -0.2
1,316,775 - +0.5
1,316,775 - +0.9
1,317,024 + Rru_A1119 0.30 -0.9
1,317,024 + Rru_A1119 0.30 +1.2
1,317,024 + Rru_A1119 0.30 +0.1
1,317,025 - Rru_A1119 0.30 -0.9
1,317,025 - Rru_A1119 0.30 -0.1
1,317,234 + Rru_A1119 0.47 +0.0
1,317,234 + Rru_A1119 0.47 +0.5
1,317,234 + Rru_A1119 0.47 -0.6
1,317,283 + Rru_A1119 0.51 +0.5

Or see this region's nucleotide sequence