Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0768

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0767 and Rru_A0768 overlap by 4 nucleotidesRru_A0768 and Rru_A0769 are separated by 229 nucleotides Rru_A0767: Rru_A0767 - ABC transporter component (NCBI), at 904,247 to 905,320 _A0767 Rru_A0768: Rru_A0768 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 905,317 to 906,993 _A0768 Rru_A0769: Rru_A0769 - extracellular solute-binding protein, family 1 (NCBI), at 907,223 to 908,266 _A0769 Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1at 904.626 kb on + strand, within Rru_A0767at 904.626 kb on + strand, within Rru_A0767at 904.626 kb on + strand, within Rru_A0767at 904.627 kb on - strand, within Rru_A0767at 905.581 kb on + strand, within Rru_A0768at 905.758 kb on + strand, within Rru_A0768at 905.759 kb on - strand, within Rru_A0768at 905.868 kb on - strand, within Rru_A0768at 906.002 kb on + strand, within Rru_A0768at 906.003 kb on - strand, within Rru_A0768at 906.331 kb on - strand, within Rru_A0768at 906.477 kb on + strand, within Rru_A0768at 906.478 kb on - strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.524 kb on + strand, within Rru_A0768at 906.525 kb on - strand, within Rru_A0768at 906.530 kb on + strand, within Rru_A0768at 906.531 kb on - strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.669 kb on - strand, within Rru_A0768at 906.669 kb on - strand, within Rru_A0768at 906.679 kb on + strand, within Rru_A0768at 906.825 kb on + strand, within Rru_A0768at 906.825 kb on + strand, within Rru_A0768at 907.398 kb on + strand, within Rru_A0769at 907.399 kb on - strand, within Rru_A0769at 907.590 kb on + strand, within Rru_A0769at 907.591 kb on - strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.594 kb on - strand, within Rru_A0769at 907.761 kb on + strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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904,626 + Rru_A0767 0.35 -0.4
904,626 + Rru_A0767 0.35 -0.8
904,626 + Rru_A0767 0.35 -0.2
904,627 - Rru_A0767 0.35 -0.6
905,581 + Rru_A0768 0.16 -0.3
905,758 + Rru_A0768 0.26 -2.0
905,759 - Rru_A0768 0.26 -0.0
905,868 - Rru_A0768 0.33 +0.1
906,002 + Rru_A0768 0.41 -1.4
906,003 - Rru_A0768 0.41 -0.7
906,331 - Rru_A0768 0.60 -0.3
906,477 + Rru_A0768 0.69 +0.6
906,478 - Rru_A0768 0.69 -1.0
906,518 + Rru_A0768 0.72 -0.8
906,518 + Rru_A0768 0.72 -0.8
906,518 + Rru_A0768 0.72 -1.1
906,518 + Rru_A0768 0.72 -0.6
906,524 + Rru_A0768 0.72 -0.1
906,525 - Rru_A0768 0.72 -0.9
906,530 + Rru_A0768 0.72 +0.2
906,531 - Rru_A0768 0.72 +0.2
906,668 + Rru_A0768 0.81 -0.8
906,668 + Rru_A0768 0.81 +0.3
906,668 + Rru_A0768 0.81 -0.3
906,669 - Rru_A0768 0.81 -0.1
906,669 - Rru_A0768 0.81 +0.9
906,679 + Rru_A0768 0.81 -0.1
906,825 + Rru_A0768 0.90 +0.9
906,825 + Rru_A0768 0.90 -0.3
907,398 + Rru_A0769 0.17 +0.3
907,399 - Rru_A0769 0.17 -0.4
907,590 + Rru_A0769 0.35 -0.4
907,591 - Rru_A0769 0.35 +0.2
907,593 + Rru_A0769 0.35 -0.2
907,593 + Rru_A0769 0.35 -0.1
907,593 + Rru_A0769 0.35 -0.4
907,594 - Rru_A0769 0.36 +0.9
907,761 + Rru_A0769 0.52 -0.4
907,762 - Rru_A0769 0.52 -0.5
907,762 - Rru_A0769 0.52 -0.8
907,825 - Rru_A0769 0.58 -0.7
907,825 - Rru_A0769 0.58 -0.5
907,825 - Rru_A0769 0.58 -0.6
907,933 + Rru_A0769 0.68 -0.5
907,933 + Rru_A0769 0.68 -0.6
907,934 - Rru_A0769 0.68 -0.2
907,934 - Rru_A0769 0.68 -0.0
907,934 - Rru_A0769 0.68 -0.2

Or see this region's nucleotide sequence