Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0731 and Rru_A0732 are separated by 87 nucleotides Rru_A0732 and Rru_A0733 overlap by 4 nucleotides Rru_A0733 and Rru_A0734 are separated by 114 nucleotides Rru_A0734 and Rru_A0735 are separated by 28 nucleotides
Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302
_A0731
Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121
_A0732
Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933
_A0733
Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503
_A0734
Rru_A0735: Rru_A0735 - Sugar fermentation stimulation protein (NCBI), at 861,532 to 862,269
_A0735
Position (kb) 860
861 Strain fitness (log2 ratio) -1
0
1
2 at 859.300 kb on + strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.301 kb on - strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.334 kb on - strand at 859.373 kb on - strand at 859.392 kb on - strand at 859.392 kb on - strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.555 kb on + strand, within Rru_A0732 at 859.555 kb on + strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.557 kb on + strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.731 kb on - strand, within Rru_A0732 at 859.969 kb on + strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 860.048 kb on + strand at 860.048 kb on + strand at 860.049 kb on - strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 861.033 kb on + strand at 861.034 kb on - strand at 861.108 kb on + strand, within Rru_A0734 at 861.204 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.371 kb on + strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.372 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.374 kb on - strand, within Rru_A0734 at 861.425 kb on - strand, within Rru_A0734 at 861.605 kb on + strand at 861.606 kb on - strand, within Rru_A0735 at 861.606 kb on - strand, within Rru_A0735 at 861.651 kb on - strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.710 kb on + strand, within Rru_A0735 at 861.711 kb on - strand, within Rru_A0735 at 861.711 kb on - strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.857 kb on + strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735 at 861.858 kb on - strand, within Rru_A0735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 859,300 + -0.6 859,300 + +1.1 859,300 + +0.6 859,301 - -0.1 859,333 + +1.2 859,333 + +1.3 859,333 + +0.4 859,333 + +0.6 859,333 + +1.2 859,334 - +0.6 859,373 - +0.6 859,392 - +0.2 859,392 - +0.6 859,443 + +0.1 859,443 + +0.1 859,443 + -0.6 859,443 + -1.2 859,444 - +0.8 859,444 - +0.5 859,444 - +0.7 859,444 - +0.6 859,444 - +0.3 859,444 - +0.1 859,555 + Rru_A0732 0.23 +0.6 859,555 + Rru_A0732 0.23 -0.3 859,556 - Rru_A0732 0.23 -0.7 859,556 - Rru_A0732 0.23 +0.3 859,557 + Rru_A0732 0.23 +0.2 859,558 - Rru_A0732 0.23 -0.4 859,558 - Rru_A0732 0.23 -0.3 859,558 - Rru_A0732 0.23 -1.0 859,731 - Rru_A0732 0.47 -0.7 859,969 + Rru_A0732 0.79 -1.1 859,970 - Rru_A0732 0.79 +0.5 859,970 - Rru_A0732 0.79 +0.7 859,970 - Rru_A0732 0.79 +0.6 859,970 - Rru_A0732 0.79 -0.7 860,048 + -1.0 860,048 + -0.2 860,049 - +0.1 860,975 + +0.3 860,975 + +0.1 860,975 + -0.7 860,975 + -0.3 860,975 + -0.7 860,975 + +0.3 860,975 + +1.0 860,975 + +0.6 860,975 + +1.9 860,977 + +0.1 860,977 + -0.9 860,977 + +0.9 860,977 + +2.5 860,977 + -0.4 860,977 + +0.2 860,978 - -1.7 860,978 - +0.6 860,978 - -1.4 860,978 - -0.1 860,978 - +0.6 860,978 - +1.1 861,033 + +0.4 861,034 - +0.3 861,108 + Rru_A0734 0.13 -0.0 861,204 + Rru_A0734 0.34 +0.2 861,371 + Rru_A0734 0.71 -0.4 861,371 + Rru_A0734 0.71 +1.5 861,371 + Rru_A0734 0.71 +0.3 861,372 - Rru_A0734 0.71 +0.6 861,372 - Rru_A0734 0.71 +0.5 861,372 - Rru_A0734 0.71 +0.3 861,372 - Rru_A0734 0.71 +0.4 861,372 - Rru_A0734 0.71 +0.6 861,372 - Rru_A0734 0.71 +0.9 861,374 - Rru_A0734 0.71 -0.3 861,374 - Rru_A0734 0.71 -0.2 861,374 - Rru_A0734 0.71 +0.5 861,425 - Rru_A0734 0.83 -0.2 861,605 + +0.2 861,606 - Rru_A0735 0.10 -0.3 861,606 - Rru_A0735 0.10 -0.2 861,651 - Rru_A0735 0.16 +0.1 861,710 + Rru_A0735 0.24 +0.1 861,710 + Rru_A0735 0.24 +0.8 861,710 + Rru_A0735 0.24 +0.7 861,710 + Rru_A0735 0.24 +0.0 861,711 - Rru_A0735 0.24 -0.1 861,711 - Rru_A0735 0.24 +0.6 861,857 + Rru_A0735 0.44 -0.0 861,857 + Rru_A0735 0.44 +0.9 861,857 + Rru_A0735 0.44 +0.3 861,858 - Rru_A0735 0.44 -0.4 861,858 - Rru_A0735 0.44 +0.2 861,858 - Rru_A0735 0.44 -0.4 861,858 - Rru_A0735 0.44 +2.4 861,858 - Rru_A0735 0.44 +0.3
Or see this region's nucleotide sequence