Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0695

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0693 and Rru_A0694 overlap by 8 nucleotidesRru_A0694 and Rru_A0695 are separated by 429 nucleotidesRru_A0695 and Rru_A0696 are separated by 4 nucleotidesRru_A0696 and Rru_A0697 overlap by 4 nucleotides Rru_A0693: Rru_A0693 - Signal Transduction Histidine Kinase (NCBI), at 821,736 to 822,938 _A0693 Rru_A0694: Rru_A0694 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 822,931 to 823,374 _A0694 Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405 _A0695 Rru_A0696: Rru_A0696 - RNA methyltransferase TrmH, group 1 (NCBI), at 825,410 to 826,249 _A0696 Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652 _A0697 Position (kb) 823 824 825 826Strain fitness (log2 ratio) -2 -1 0 1at 822.905 kb on + strandat 822.905 kb on + strandat 822.905 kb on + strandat 822.906 kb on - strandat 823.139 kb on + strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.202 kb on + strand, within Rru_A0694at 823.202 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.299 kb on - strand, within Rru_A0694at 823.299 kb on - strand, within Rru_A0694at 823.342 kb on + strandat 823.343 kb on - strandat 823.374 kb on + strandat 823.375 kb on - strandat 823.497 kb on + strandat 823.498 kb on - strandat 823.498 kb on - strandat 823.502 kb on - strandat 823.502 kb on - strandat 823.511 kb on - strandat 823.523 kb on - strandat 823.608 kb on + strandat 823.608 kb on + strandat 823.822 kb on + strandat 823.823 kb on - strandat 823.828 kb on + strandat 823.828 kb on + strandat 823.930 kb on + strandat 823.930 kb on + strandat 823.930 kb on + strandat 823.931 kb on - strandat 823.931 kb on - strandat 824.254 kb on + strand, within Rru_A0695at 824.256 kb on + strand, within Rru_A0695at 824.257 kb on - strand, within Rru_A0695at 824.279 kb on + strand, within Rru_A0695at 824.279 kb on + strand, within Rru_A0695at 824.300 kb on - strand, within Rru_A0695at 824.300 kb on - strand, within Rru_A0695at 824.455 kb on - strand, within Rru_A0695at 824.455 kb on - strand, within Rru_A0695at 824.455 kb on - strand, within Rru_A0695at 824.747 kb on - strand, within Rru_A0695at 824.755 kb on - strand, within Rru_A0695at 824.926 kb on + strand, within Rru_A0695at 825.100 kb on + strand, within Rru_A0695at 825.100 kb on + strand, within Rru_A0695at 825.100 kb on + strand, within Rru_A0695at 825.100 kb on + strand, within Rru_A0695at 825.101 kb on - strand, within Rru_A0695at 825.101 kb on - strand, within Rru_A0695at 825.102 kb on + strand, within Rru_A0695at 825.175 kb on + strand, within Rru_A0695at 825.208 kb on + strand, within Rru_A0695at 825.219 kb on + strand, within Rru_A0695at 825.322 kb on - strandat 825.337 kb on + strandat 825.337 kb on + strandat 825.337 kb on + strandat 825.337 kb on + strandat 825.338 kb on - strandat 825.340 kb on - strandat 825.340 kb on - strandat 825.364 kb on + strandat 825.364 kb on + strandat 825.364 kb on + strandat 825.365 kb on - strandat 825.366 kb on + strandat 825.366 kb on + strandat 825.367 kb on - strandat 825.407 kb on - strandat 825.872 kb on + strand, within Rru_A0696at 825.923 kb on + strand, within Rru_A0696

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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822,905 + +0.1
822,905 + -0.4
822,905 + -0.4
822,906 - -0.6
823,139 + Rru_A0694 0.47 -1.6
823,140 - Rru_A0694 0.47 -0.2
823,140 - Rru_A0694 0.47 -0.3
823,140 - Rru_A0694 0.47 +0.0
823,202 + Rru_A0694 0.61 -0.2
823,202 + Rru_A0694 0.61 -0.0
823,298 + Rru_A0694 0.83 -0.7
823,298 + Rru_A0694 0.83 +0.1
823,298 + Rru_A0694 0.83 -0.3
823,299 - Rru_A0694 0.83 +0.6
823,299 - Rru_A0694 0.83 +0.9
823,342 + -0.0
823,343 - -0.9
823,374 + -0.6
823,375 - -0.1
823,497 + -0.3
823,498 - -0.8
823,498 - -0.1
823,502 - +0.6
823,502 - -0.2
823,511 - +0.1
823,523 - +0.2
823,608 + +0.9
823,608 + -0.1
823,822 + +0.4
823,823 - -0.2
823,828 + -0.7
823,828 + -0.6
823,930 + -0.2
823,930 + -0.1
823,930 + -0.1
823,931 - -0.6
823,931 - -2.2
824,254 + Rru_A0695 0.28 -0.2
824,256 + Rru_A0695 0.28 -0.8
824,257 - Rru_A0695 0.28 +0.6
824,279 + Rru_A0695 0.30 +0.6
824,279 + Rru_A0695 0.30 -0.1
824,300 - Rru_A0695 0.31 -1.1
824,300 - Rru_A0695 0.31 -0.7
824,455 - Rru_A0695 0.41 +0.7
824,455 - Rru_A0695 0.41 -0.5
824,455 - Rru_A0695 0.41 -0.9
824,747 - Rru_A0695 0.59 -1.4
824,755 - Rru_A0695 0.59 -0.1
824,926 + Rru_A0695 0.70 -0.3
825,100 + Rru_A0695 0.81 +0.2
825,100 + Rru_A0695 0.81 +0.2
825,100 + Rru_A0695 0.81 -0.6
825,100 + Rru_A0695 0.81 -1.0
825,101 - Rru_A0695 0.81 -1.4
825,101 - Rru_A0695 0.81 -0.1
825,102 + Rru_A0695 0.81 -1.5
825,175 + Rru_A0695 0.86 -0.4
825,208 + Rru_A0695 0.88 -0.4
825,219 + Rru_A0695 0.88 -0.0
825,322 - -0.9
825,337 + -0.8
825,337 + +0.1
825,337 + -0.2
825,337 + -0.2
825,338 - -1.6
825,340 - -0.3
825,340 - -0.0
825,364 + -0.7
825,364 + +0.0
825,364 + -0.5
825,365 - -0.8
825,366 + -0.6
825,366 + -0.3
825,367 - -0.3
825,407 - +0.6
825,872 + Rru_A0696 0.55 -0.1
825,923 + Rru_A0696 0.61 -0.6

Or see this region's nucleotide sequence