Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0627

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0626 and Rru_A0627 are separated by 83 nucleotidesRru_A0627 and Rru_A0628 overlap by 4 nucleotides Rru_A0626: Rru_A0626 - Transcriptional Regulator, Fis family (NCBI), at 744,088 to 745,506 _A0626 Rru_A0627: Rru_A0627 - Bacteriochlorophyll/chlorophyll synthetase (NCBI), at 745,590 to 746,501 _A0627 Rru_A0628: Rru_A0628 - PUCC protein (NCBI), at 746,498 to 747,847 _A0628 Position (kb) 745 746 747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 745.551 kb on - strandat 745.553 kb on - strandat 745.579 kb on - strandat 745.614 kb on + strandat 745.638 kb on - strandat 745.638 kb on - strandat 745.860 kb on + strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.862 kb on + strand, within Rru_A0627at 745.863 kb on - strand, within Rru_A0627at 745.863 kb on - strand, within Rru_A0627at 745.963 kb on - strand, within Rru_A0627at 745.965 kb on - strand, within Rru_A0627at 746.112 kb on + strand, within Rru_A0627at 746.113 kb on - strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.115 kb on - strand, within Rru_A0627at 746.115 kb on - strand, within Rru_A0627at 746.145 kb on - strand, within Rru_A0627at 746.145 kb on - strand, within Rru_A0627at 746.299 kb on - strand, within Rru_A0627at 746.299 kb on - strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.390 kb on + strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.413 kb on - strandat 746.413 kb on - strandat 746.550 kb on + strandat 747.017 kb on + strand, within Rru_A0628at 747.017 kb on + strand, within Rru_A0628at 747.018 kb on - strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.236 kb on + strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
remove
745,551 - -2.0
745,553 - -3.5
745,579 - -1.0
745,614 + -4.0
745,638 - -4.0
745,638 - -2.3
745,860 + Rru_A0627 0.30 -2.8
745,861 - Rru_A0627 0.30 -2.6
745,861 - Rru_A0627 0.30 -0.1
745,861 - Rru_A0627 0.30 -2.5
745,861 - Rru_A0627 0.30 -4.2
745,862 + Rru_A0627 0.30 -3.3
745,863 - Rru_A0627 0.30 -3.5
745,863 - Rru_A0627 0.30 -2.2
745,963 - Rru_A0627 0.41 -4.7
745,965 - Rru_A0627 0.41 -1.3
746,112 + Rru_A0627 0.57 -3.2
746,113 - Rru_A0627 0.57 +0.5
746,114 + Rru_A0627 0.57 -1.8
746,114 + Rru_A0627 0.57 -3.6
746,114 + Rru_A0627 0.57 -0.9
746,115 - Rru_A0627 0.58 +0.2
746,115 - Rru_A0627 0.58 -2.2
746,145 - Rru_A0627 0.61 -3.3
746,145 - Rru_A0627 0.61 +0.5
746,299 - Rru_A0627 0.78 -0.6
746,299 - Rru_A0627 0.78 -2.7
746,388 + Rru_A0627 0.88 -3.3
746,388 + Rru_A0627 0.88 -3.3
746,388 + Rru_A0627 0.88 +0.5
746,388 + Rru_A0627 0.88 -3.5
746,389 - Rru_A0627 0.88 -3.1
746,389 - Rru_A0627 0.88 -2.4
746,389 - Rru_A0627 0.88 -2.8
746,390 + Rru_A0627 0.88 -1.7
746,391 - Rru_A0627 0.88 +0.5
746,391 - Rru_A0627 0.88 +0.5
746,391 - Rru_A0627 0.88 -1.5
746,391 - Rru_A0627 0.88 +0.5
746,412 + +1.5
746,412 + -3.7
746,412 + -1.8
746,412 + -1.9
746,412 + -2.5
746,412 + -2.7
746,412 + -2.1
746,413 - +0.5
746,413 - -1.7
746,550 + -1.7
747,017 + Rru_A0628 0.38 -0.4
747,017 + Rru_A0628 0.38 -0.2
747,018 - Rru_A0628 0.39 -0.7
747,019 + Rru_A0628 0.39 +0.5
747,019 + Rru_A0628 0.39 -0.8
747,019 + Rru_A0628 0.39 +0.2
747,020 - Rru_A0628 0.39 -0.7
747,020 - Rru_A0628 0.39 -0.6
747,236 + Rru_A0628 0.55 -0.9
747,237 - Rru_A0628 0.55 -3.0
747,237 - Rru_A0628 0.55 -2.8
747,237 - Rru_A0628 0.55 -1.6

Or see this region's nucleotide sequence