Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0613 and Rru_A0614 are separated by 38 nucleotides Rru_A0614 and Rru_A0615 are separated by 237 nucleotides Rru_A0615 and Rru_A0616 are separated by 40 nucleotides
Rru_A0613: Rru_A0613 - Bacteriochlorophyll 4-vinyl reductase (NCBI), at 728,248 to 728,883
_A0613
Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809
_A0614
Rru_A0615: Rru_A0615 - photosynthetic complex assembly protein (NCBI), at 730,047 to 730,514
_A0615
Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229
_A0616
Position (kb) 728
729
730 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 728.100 kb on - strand at 728.144 kb on + strand at 728.384 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.606 kb on + strand, within Rru_A0613 at 728.738 kb on + strand, within Rru_A0613 at 728.739 kb on - strand, within Rru_A0613 at 728.941 kb on - strand at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.078 kb on + strand, within Rru_A0614 at 729.078 kb on + strand, within Rru_A0614 at 729.105 kb on + strand, within Rru_A0614 at 729.290 kb on + strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.462 kb on + strand, within Rru_A0614 at 729.462 kb on + strand, within Rru_A0614 at 729.463 kb on - strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.620 kb on - strand, within Rru_A0614 at 729.716 kb on + strand, within Rru_A0614 at 729.717 kb on - strand, within Rru_A0614 at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.781 kb on + strand at 729.782 kb on - strand at 730.048 kb on + strand at 730.049 kb on - strand at 730.081 kb on + strand at 730.082 kb on - strand at 730.195 kb on + strand, within Rru_A0615 at 730.268 kb on + strand, within Rru_A0615 at 730.269 kb on - strand, within Rru_A0615 at 730.269 kb on - strand, within Rru_A0615 at 730.488 kb on + strand at 730.488 kb on + strand at 730.489 kb on - strand at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.656 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.658 kb on + strand, within Rru_A0616 at 730.659 kb on - strand, within Rru_A0616 at 730.659 kb on - strand, within Rru_A0616 at 730.735 kb on - strand, within Rru_A0616 at 730.775 kb on + strand, within Rru_A0616 at 730.776 kb on - strand, within Rru_A0616 at 730.776 kb on - strand, within Rru_A0616
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 728,100 - +0.5 728,144 + -1.8 728,384 + Rru_A0613 0.21 -3.5 728,387 + Rru_A0613 0.22 -1.6 728,387 + Rru_A0613 0.22 -2.8 728,387 + Rru_A0613 0.22 -2.5 728,606 + Rru_A0613 0.56 -2.9 728,738 + Rru_A0613 0.77 -0.1 728,739 - Rru_A0613 0.77 -2.9 728,941 - -0.1 729,067 + Rru_A0614 0.16 -2.8 729,067 + Rru_A0614 0.16 -3.2 729,067 + Rru_A0614 0.16 +0.5 729,067 + Rru_A0614 0.16 -1.5 729,078 + Rru_A0614 0.18 -2.0 729,078 + Rru_A0614 0.18 -4.0 729,105 + Rru_A0614 0.21 +0.5 729,290 + Rru_A0614 0.41 -4.0 729,291 - Rru_A0614 0.42 -1.7 729,291 - Rru_A0614 0.42 -1.6 729,291 - Rru_A0614 0.42 -2.8 729,462 + Rru_A0614 0.61 +0.5 729,462 + Rru_A0614 0.61 -0.5 729,463 - Rru_A0614 0.61 -2.1 729,565 + Rru_A0614 0.72 -0.9 729,565 + Rru_A0614 0.72 -3.0 729,565 + Rru_A0614 0.72 -3.2 729,565 + Rru_A0614 0.72 -3.3 729,565 + Rru_A0614 0.72 +0.2 729,566 - Rru_A0614 0.73 -2.6 729,566 - Rru_A0614 0.73 -2.5 729,566 - Rru_A0614 0.73 -2.4 729,619 + Rru_A0614 0.78 -2.9 729,619 + Rru_A0614 0.78 -2.9 729,620 - Rru_A0614 0.79 -2.6 729,716 + Rru_A0614 0.89 -3.8 729,717 - Rru_A0614 0.90 -3.9 729,779 + -2.3 729,779 + -1.9 729,779 + -4.5 729,779 + -1.8 729,779 + -3.3 729,779 + -0.9 729,779 + -4.3 729,780 - -2.8 729,780 - -2.5 729,780 - -1.0 729,780 - -3.7 729,780 - -3.9 729,781 + +0.5 729,782 - -1.5 730,048 + -2.2 730,049 - -0.7 730,081 + -0.9 730,082 - -3.6 730,195 + Rru_A0615 0.32 -3.3 730,268 + Rru_A0615 0.47 -1.2 730,269 - Rru_A0615 0.47 -3.1 730,269 - Rru_A0615 0.47 -2.7 730,488 + -2.4 730,488 + -3.3 730,489 - -2.1 730,656 + Rru_A0616 0.15 -2.5 730,656 + Rru_A0616 0.15 -3.2 730,656 + Rru_A0616 0.15 +0.5 730,656 + Rru_A0616 0.15 -1.8 730,658 + Rru_A0616 0.15 -3.0 730,658 + Rru_A0616 0.15 -3.6 730,658 + Rru_A0616 0.15 -2.9 730,658 + Rru_A0616 0.15 -2.0 730,659 - Rru_A0616 0.15 -0.4 730,659 - Rru_A0616 0.15 -2.4 730,735 - Rru_A0616 0.27 -2.4 730,775 + Rru_A0616 0.33 -1.3 730,776 - Rru_A0616 0.33 -2.0 730,776 - Rru_A0616 0.33 +0.5
Or see this region's nucleotide sequence