Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0465 and Rru_A0466 are separated by 103 nucleotides Rru_A0466 and Rru_A0467 are separated by 121 nucleotides
Rru_A0465: Rru_A0465 - Phosphoserine phosphatase SerB (NCBI), at 545,391 to 546,290
_A0465
Rru_A0466: Rru_A0466 - tRNA isopentenyltransferase (NCBI), at 546,394 to 547,374
_A0466
Rru_A0467: Rru_A0467 - Acetolactate synthase, large subunit, biosynthetic type (NCBI), at 547,496 to 549,256
_A0467
Position (kb) 546
547
548 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 546.382 kb on + strand at 546.383 kb on - strand at 546.387 kb on + strand at 546.387 kb on + strand at 546.387 kb on + strand at 546.388 kb on - strand at 547.601 kb on + strand at 547.682 kb on + strand, within Rru_A0467 at 547.682 kb on + strand, within Rru_A0467 at 547.682 kb on + strand, within Rru_A0467 at 547.889 kb on + strand, within Rru_A0467 at 547.889 kb on + strand, within Rru_A0467 at 547.890 kb on - strand, within Rru_A0467 at 547.890 kb on - strand, within Rru_A0467 at 547.890 kb on - strand, within Rru_A0467 at 548.015 kb on + strand, within Rru_A0467 at 548.015 kb on + strand, within Rru_A0467 at 548.016 kb on - strand, within Rru_A0467 at 548.048 kb on + strand, within Rru_A0467 at 548.048 kb on + strand, within Rru_A0467 at 548.129 kb on + strand, within Rru_A0467 at 548.240 kb on + strand, within Rru_A0467 at 548.240 kb on + strand, within Rru_A0467 at 548.241 kb on - strand, within Rru_A0467 at 548.261 kb on + strand, within Rru_A0467 at 548.262 kb on - strand, within Rru_A0467
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 546,382 + +0.4 546,383 - -0.3 546,387 + -0.0 546,387 + +0.1 546,387 + -0.2 546,388 - -1.6 547,601 + -1.0 547,682 + Rru_A0467 0.11 -4.8 547,682 + Rru_A0467 0.11 -4.0 547,682 + Rru_A0467 0.11 -4.7 547,889 + Rru_A0467 0.22 -5.3 547,889 + Rru_A0467 0.22 -0.4 547,890 - Rru_A0467 0.22 -3.6 547,890 - Rru_A0467 0.22 -0.9 547,890 - Rru_A0467 0.22 -1.0 548,015 + Rru_A0467 0.29 -4.9 548,015 + Rru_A0467 0.29 -2.3 548,016 - Rru_A0467 0.30 -5.6 548,048 + Rru_A0467 0.31 -1.6 548,048 + Rru_A0467 0.31 -3.8 548,129 + Rru_A0467 0.36 -5.4 548,240 + Rru_A0467 0.42 -3.5 548,240 + Rru_A0467 0.42 -4.7 548,241 - Rru_A0467 0.42 -4.7 548,261 + Rru_A0467 0.43 -2.7 548,262 - Rru_A0467 0.43 -5.7
Or see this region's nucleotide sequence