Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0031 and Rru_A0032 are separated by 66 nucleotides Rru_A0032 and Rru_A0033 overlap by 4 nucleotides Rru_A0033 and Rru_A0034 overlap by 4 nucleotides
Rru_A0031: Rru_A0031 - Transcriptional Regulator, LysR family (NCBI), at 34,821 to 35,720
_A0031
Rru_A0032: Rru_A0032 - TPR repeat (NCBI), at 35,787 to 37,271
_A0032
Rru_A0033: Rru_A0033 - Cytochrome C biogenesis protein (NCBI), at 37,268 to 37,780
_A0033
Rru_A0034: Rru_A0034 - Periplasmic protein thiol-disulfide oxidoreductase DsbE (NCBI), at 37,777 to 38,364
_A0034
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 34.991 kb on + strand, within Rru_A0031 at 34.992 kb on - strand, within Rru_A0031 at 34.992 kb on - strand, within Rru_A0031 at 34.992 kb on - strand, within Rru_A0031 at 35.025 kb on + strand, within Rru_A0031 at 35.025 kb on + strand, within Rru_A0031 at 35.026 kb on - strand, within Rru_A0031 at 35.069 kb on + strand, within Rru_A0031 at 35.424 kb on + strand, within Rru_A0031 at 35.489 kb on + strand, within Rru_A0031 at 35.490 kb on - strand, within Rru_A0031 at 35.490 kb on - strand, within Rru_A0031 at 35.490 kb on - strand, within Rru_A0031 at 35.544 kb on + strand, within Rru_A0031 at 35.544 kb on + strand, within Rru_A0031 at 35.544 kb on + strand, within Rru_A0031 at 35.544 kb on + strand, within Rru_A0031 at 35.545 kb on - strand, within Rru_A0031 at 35.547 kb on - strand, within Rru_A0031 at 35.788 kb on + strand at 35.788 kb on + strand at 35.874 kb on + strand at 35.875 kb on - strand at 36.112 kb on + strand, within Rru_A0032 at 36.112 kb on + strand, within Rru_A0032 at 36.112 kb on + strand, within Rru_A0032 at 36.113 kb on - strand, within Rru_A0032 at 36.652 kb on + strand, within Rru_A0032 at 36.653 kb on - strand, within Rru_A0032 at 36.653 kb on - strand, within Rru_A0032 at 36.653 kb on - strand, within Rru_A0032 at 36.919 kb on + strand, within Rru_A0032 at 36.960 kb on - strand, within Rru_A0032 at 37.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 34,991 + Rru_A0031 0.19 -0.1 34,992 - Rru_A0031 0.19 +0.6 34,992 - Rru_A0031 0.19 -0.1 34,992 - Rru_A0031 0.19 -2.4 35,025 + Rru_A0031 0.23 -0.1 35,025 + Rru_A0031 0.23 +0.6 35,026 - Rru_A0031 0.23 -0.2 35,069 + Rru_A0031 0.28 +0.7 35,424 + Rru_A0031 0.67 +0.2 35,489 + Rru_A0031 0.74 +0.0 35,490 - Rru_A0031 0.74 +0.6 35,490 - Rru_A0031 0.74 +0.0 35,490 - Rru_A0031 0.74 -0.4 35,544 + Rru_A0031 0.80 +0.0 35,544 + Rru_A0031 0.80 -0.2 35,544 + Rru_A0031 0.80 -0.2 35,544 + Rru_A0031 0.80 -0.3 35,545 - Rru_A0031 0.80 +0.2 35,547 - Rru_A0031 0.81 +0.4 35,788 + -1.4 35,788 + -0.8 35,874 + -1.7 35,875 - -1.5 36,112 + Rru_A0032 0.22 -2.6 36,112 + Rru_A0032 0.22 -1.9 36,112 + Rru_A0032 0.22 -2.8 36,113 - Rru_A0032 0.22 -2.7 36,652 + Rru_A0032 0.58 -5.2 36,653 - Rru_A0032 0.58 +0.0 36,653 - Rru_A0032 0.58 -3.2 36,653 - Rru_A0032 0.58 -2.9 36,919 + Rru_A0032 0.76 -2.4 36,960 - Rru_A0032 0.79 -4.0 37,163 - -0.4
Or see this region's nucleotide sequence