Experiment: H2 deepwell acetate FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06445 and MMP_RS06450 are separated by 60 nucleotides MMP_RS06450 and MMP_RS06455 are separated by 40 nucleotides
MMP_RS06445: MMP_RS06445 - DUF89 domain-containing protein, at 1,236,001 to 1,236,900
_RS06445
MMP_RS06450: MMP_RS06450 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,236,961 to 1,238,010
_RS06450
MMP_RS06455: MMP_RS06455 - phenylalanine--tRNA ligase subunit beta, at 1,238,051 to 1,239,715
_RS06455
Position (kb)
1236
1237
1238
1239 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1235.962 kb on + strand at 1235.979 kb on + strand at 1235.979 kb on + strand at 1235.981 kb on - strand at 1235.981 kb on - strand at 1235.982 kb on + strand at 1236.033 kb on - strand at 1236.065 kb on - strand at 1236.181 kb on + strand, within MMP_RS06445 at 1236.211 kb on - strand, within MMP_RS06445 at 1236.253 kb on - strand, within MMP_RS06445 at 1236.585 kb on - strand, within MMP_RS06445 at 1236.585 kb on - strand, within MMP_RS06445 at 1236.887 kb on - strand at 1236.919 kb on + strand at 1236.938 kb on + strand at 1236.970 kb on - strand at 1238.021 kb on + strand at 1238.021 kb on + strand at 1238.313 kb on - strand at 1238.523 kb on + strand at 1238.638 kb on + strand at 1238.804 kb on + strand at 1238.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate FREE remove 1,235,962 + +1.0 1,235,979 + +0.0 1,235,979 + +0.9 1,235,981 - +1.8 1,235,981 - -1.5 1,235,982 + -0.1 1,236,033 - -0.1 1,236,065 - -0.5 1,236,181 + MMP_RS06445 0.20 +1.1 1,236,211 - MMP_RS06445 0.23 -1.1 1,236,253 - MMP_RS06445 0.28 +0.5 1,236,585 - MMP_RS06445 0.65 -0.3 1,236,585 - MMP_RS06445 0.65 +1.0 1,236,887 - -0.0 1,236,919 + -3.5 1,236,938 + -1.5 1,236,970 - -2.9 1,238,021 + -4.5 1,238,021 + -2.6 1,238,313 - -2.7 1,238,523 + -0.9 1,238,638 + -3.2 1,238,804 + -2.1 1,238,932 + -2.9
Or see this region's nucleotide sequence