Experiment: Paraquat dichloride 0.045 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2729 and Ga0059261_2730 overlap by 4 nucleotides Ga0059261_2730 and Ga0059261_2731 overlap by 4 nucleotides Ga0059261_2731 and Ga0059261_2732 are separated by 50 nucleotides
Ga0059261_2729: Ga0059261_2729 - threonyl-tRNA synthetase (EC 6.1.1.3), at 2,840,852 to 2,842,843
_2729
Ga0059261_2730: Ga0059261_2730 - Sortase and related acyltransferases, at 2,842,840 to 2,843,283
_2730
Ga0059261_2731: Ga0059261_2731 - transcriptional regulator, AraC family, at 2,843,280 to 2,843,933
_2731
Ga0059261_2732: Ga0059261_2732 - hypothetical protein, at 2,843,984 to 2,845,129
_2732
Position (kb)
2842
2843
2844 Strain fitness (log2 ratio)
-1
0
1
2 at 2843.183 kb on - strand, within Ga0059261_2730 at 2843.183 kb on - strand, within Ga0059261_2730 at 2843.343 kb on + strand at 2843.343 kb on + strand at 2843.344 kb on - strand at 2843.344 kb on - strand at 2843.344 kb on - strand at 2843.344 kb on - strand at 2843.344 kb on - strand at 2843.371 kb on - strand, within Ga0059261_2731 at 2843.652 kb on - strand, within Ga0059261_2731 at 2843.745 kb on + strand, within Ga0059261_2731 at 2843.746 kb on - strand, within Ga0059261_2731 at 2843.746 kb on - strand, within Ga0059261_2731 at 2843.746 kb on - strand, within Ga0059261_2731 at 2843.746 kb on - strand, within Ga0059261_2731 at 2843.746 kb on - strand, within Ga0059261_2731 at 2843.931 kb on + strand at 2843.974 kb on + strand at 2843.974 kb on + strand at 2843.975 kb on - strand at 2844.152 kb on + strand, within Ga0059261_2732 at 2844.152 kb on + strand, within Ga0059261_2732 at 2844.153 kb on - strand at 2844.153 kb on - strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.161 kb on + strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.162 kb on - strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.164 kb on + strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand, within Ga0059261_2732 at 2844.165 kb on - strand at 2844.254 kb on + strand, within Ga0059261_2732 at 2844.254 kb on + strand, within Ga0059261_2732 at 2844.254 kb on + strand, within Ga0059261_2732 at 2844.255 kb on - strand, within Ga0059261_2732 at 2844.255 kb on - strand, within Ga0059261_2732 at 2844.255 kb on - strand, within Ga0059261_2732 at 2844.255 kb on - strand, within Ga0059261_2732 at 2844.255 kb on - strand, within Ga0059261_2732
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.045 mg/ml remove 2,843,183 - Ga0059261_2730 0.77 +0.4 2,843,183 - Ga0059261_2730 0.77 +1.1 2,843,343 + -1.3 2,843,343 + +0.4 2,843,344 - +0.4 2,843,344 - +0.1 2,843,344 - -0.8 2,843,344 - +1.3 2,843,344 - -0.5 2,843,371 - Ga0059261_2731 0.14 +0.7 2,843,652 - Ga0059261_2731 0.57 +0.1 2,843,745 + Ga0059261_2731 0.71 -0.2 2,843,746 - Ga0059261_2731 0.71 -0.7 2,843,746 - Ga0059261_2731 0.71 +0.1 2,843,746 - Ga0059261_2731 0.71 +0.1 2,843,746 - Ga0059261_2731 0.71 +0.4 2,843,746 - Ga0059261_2731 0.71 -0.0 2,843,931 + -0.1 2,843,974 + +1.0 2,843,974 + +0.5 2,843,975 - -0.1 2,844,152 + Ga0059261_2732 0.15 +1.1 2,844,152 + Ga0059261_2732 0.15 +0.5 2,844,153 - +1.5 2,844,153 - Ga0059261_2732 0.15 +0.2 2,844,161 + Ga0059261_2732 0.15 -0.2 2,844,161 + Ga0059261_2732 0.15 +0.4 2,844,161 + Ga0059261_2732 0.15 +0.5 2,844,161 + Ga0059261_2732 0.15 -0.5 2,844,161 + Ga0059261_2732 0.15 -0.3 2,844,161 + Ga0059261_2732 0.15 -0.5 2,844,161 + Ga0059261_2732 0.15 +0.3 2,844,161 + Ga0059261_2732 0.15 +0.3 2,844,161 + Ga0059261_2732 0.15 -0.3 2,844,161 + Ga0059261_2732 0.15 +0.4 2,844,161 + Ga0059261_2732 0.15 +0.7 2,844,161 + Ga0059261_2732 0.15 +0.3 2,844,161 + Ga0059261_2732 0.15 -0.6 2,844,162 - Ga0059261_2732 0.16 -0.4 2,844,162 - Ga0059261_2732 0.16 -0.2 2,844,162 - Ga0059261_2732 0.16 +0.5 2,844,162 - Ga0059261_2732 0.16 +0.4 2,844,162 - Ga0059261_2732 0.16 -0.2 2,844,162 - Ga0059261_2732 0.16 -0.5 2,844,162 - Ga0059261_2732 0.16 +0.3 2,844,162 - Ga0059261_2732 0.16 -0.6 2,844,164 + Ga0059261_2732 0.16 -0.1 2,844,164 + Ga0059261_2732 0.16 +0.5 2,844,164 + Ga0059261_2732 0.16 +0.1 2,844,164 + Ga0059261_2732 0.16 +0.5 2,844,164 + Ga0059261_2732 0.16 +0.4 2,844,164 + Ga0059261_2732 0.16 -0.5 2,844,164 + Ga0059261_2732 0.16 +0.1 2,844,164 + Ga0059261_2732 0.16 +0.6 2,844,164 + Ga0059261_2732 0.16 +0.5 2,844,165 - Ga0059261_2732 0.16 +0.6 2,844,165 - Ga0059261_2732 0.16 +0.3 2,844,165 - Ga0059261_2732 0.16 +0.1 2,844,165 - Ga0059261_2732 0.16 -0.7 2,844,165 - Ga0059261_2732 0.16 -0.2 2,844,165 - Ga0059261_2732 0.16 -0.8 2,844,165 - +2.5 2,844,254 + Ga0059261_2732 0.24 +0.1 2,844,254 + Ga0059261_2732 0.24 -0.2 2,844,254 + Ga0059261_2732 0.24 -0.6 2,844,255 - Ga0059261_2732 0.24 +0.1 2,844,255 - Ga0059261_2732 0.24 -0.4 2,844,255 - Ga0059261_2732 0.24 +0.5 2,844,255 - Ga0059261_2732 0.24 +0.4 2,844,255 - Ga0059261_2732 0.24 +0.7
Or see this region's nucleotide sequence