Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1518

Experiment: Paraquat dichloride 0.045 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1516 and Ga0059261_1517 are separated by 98 nucleotidesGa0059261_1517 and Ga0059261_1518 are separated by 56 nucleotidesGa0059261_1518 and Ga0059261_1519 overlap by 4 nucleotidesGa0059261_1519 and Ga0059261_1520 overlap by 4 nucleotides Ga0059261_1516: Ga0059261_1516 - Glutathione S-transferase, at 1,595,951 to 1,596,583 _1516 Ga0059261_1517: Ga0059261_1517 - Predicted acetyltransferase, at 1,596,682 to 1,597,167 _1517 Ga0059261_1518: Ga0059261_1518 - Uncharacterized protein conserved in bacteria, at 1,597,224 to 1,597,787 _1518 Ga0059261_1519: Ga0059261_1519 - NUDIX domain, at 1,597,784 to 1,598,380 _1519 Ga0059261_1520: Ga0059261_1520 - Poly A polymerase head domain/Probable RNA and SrmB- binding site of polymerase A, at 1,598,377 to 1,599,570 _1520 Position (kb) 1597 1598Strain fitness (log2 ratio) -2 -1 0 1at 1596.255 kb on + strandat 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.255 kb on + strand, within Ga0059261_1516at 1596.256 kb on - strand, within Ga0059261_1516at 1596.256 kb on - strand, within Ga0059261_1516at 1596.256 kb on - strand, within Ga0059261_1516at 1596.270 kb on + strand, within Ga0059261_1516at 1596.369 kb on + strand, within Ga0059261_1516at 1596.456 kb on + strand, within Ga0059261_1516at 1596.456 kb on + strandat 1596.456 kb on + strand, within Ga0059261_1516at 1596.456 kb on + strand, within Ga0059261_1516at 1596.456 kb on + strand, within Ga0059261_1516at 1596.456 kb on + strand, within Ga0059261_1516at 1596.457 kb on - strand, within Ga0059261_1516at 1596.457 kb on - strand, within Ga0059261_1516at 1596.457 kb on - strand, within Ga0059261_1516at 1596.457 kb on - strand, within Ga0059261_1516at 1596.457 kb on - strand, within Ga0059261_1516at 1596.573 kb on + strandat 1596.573 kb on + strandat 1596.573 kb on + strandat 1596.574 kb on - strandat 1596.574 kb on - strandat 1596.574 kb on - strandat 1596.842 kb on + strand, within Ga0059261_1517at 1596.842 kb on + strand, within Ga0059261_1517at 1596.843 kb on - strand, within Ga0059261_1517at 1596.855 kb on + strand, within Ga0059261_1517at 1596.856 kb on - strand, within Ga0059261_1517at 1596.951 kb on + strand, within Ga0059261_1517at 1597.040 kb on - strand, within Ga0059261_1517at 1597.040 kb on - strand, within Ga0059261_1517at 1597.042 kb on + strand, within Ga0059261_1517at 1597.042 kb on + strand, within Ga0059261_1517at 1597.042 kb on + strand, within Ga0059261_1517at 1597.042 kb on + strand, within Ga0059261_1517at 1597.043 kb on - strand, within Ga0059261_1517at 1597.043 kb on - strand, within Ga0059261_1517at 1597.043 kb on - strand, within Ga0059261_1517at 1597.043 kb on - strand, within Ga0059261_1517at 1597.189 kb on + strandat 1597.201 kb on + strandat 1597.202 kb on - strandat 1597.202 kb on - strandat 1597.202 kb on - strandat 1597.367 kb on + strand, within Ga0059261_1518at 1597.367 kb on + strand, within Ga0059261_1518at 1597.368 kb on - strand, within Ga0059261_1518at 1597.550 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.695 kb on + strand, within Ga0059261_1518at 1597.696 kb on - strand, within Ga0059261_1518at 1597.696 kb on - strand, within Ga0059261_1518at 1597.696 kb on - strand, within Ga0059261_1518at 1597.698 kb on + strand, within Ga0059261_1518at 1597.698 kb on + strand, within Ga0059261_1518at 1597.698 kb on + strand, within Ga0059261_1518at 1597.698 kb on + strand, within Ga0059261_1518at 1597.699 kb on - strand, within Ga0059261_1518at 1597.699 kb on - strand, within Ga0059261_1518at 1597.699 kb on - strand, within Ga0059261_1518at 1597.699 kb on - strand, within Ga0059261_1518at 1597.699 kb on - strand, within Ga0059261_1518at 1598.085 kb on + strand, within Ga0059261_1519at 1598.086 kb on - strand, within Ga0059261_1519at 1598.086 kb on - strand, within Ga0059261_1519at 1598.288 kb on + strand, within Ga0059261_1519at 1598.288 kb on + strand, within Ga0059261_1519at 1598.291 kb on + strand, within Ga0059261_1519

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.045 mg/ml
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1,596,255 + +0.2
1,596,255 + Ga0059261_1516 0.48 +0.1
1,596,255 + Ga0059261_1516 0.48 -1.1
1,596,255 + Ga0059261_1516 0.48 +0.4
1,596,255 + Ga0059261_1516 0.48 +0.1
1,596,255 + Ga0059261_1516 0.48 -0.7
1,596,255 + Ga0059261_1516 0.48 +0.7
1,596,255 + Ga0059261_1516 0.48 -0.7
1,596,255 + Ga0059261_1516 0.48 +0.2
1,596,255 + Ga0059261_1516 0.48 +0.4
1,596,256 - Ga0059261_1516 0.48 +0.5
1,596,256 - Ga0059261_1516 0.48 +0.2
1,596,256 - Ga0059261_1516 0.48 +0.2
1,596,270 + Ga0059261_1516 0.50 +0.1
1,596,369 + Ga0059261_1516 0.66 +0.3
1,596,456 + Ga0059261_1516 0.80 -0.3
1,596,456 + +1.5
1,596,456 + Ga0059261_1516 0.80 -0.5
1,596,456 + Ga0059261_1516 0.80 -0.4
1,596,456 + Ga0059261_1516 0.80 +0.7
1,596,456 + Ga0059261_1516 0.80 +0.6
1,596,457 - Ga0059261_1516 0.80 -0.2
1,596,457 - Ga0059261_1516 0.80 -1.2
1,596,457 - Ga0059261_1516 0.80 -0.2
1,596,457 - Ga0059261_1516 0.80 -0.1
1,596,457 - Ga0059261_1516 0.80 +0.3
1,596,573 + +0.8
1,596,573 + +0.4
1,596,573 + -0.0
1,596,574 - -0.2
1,596,574 - -0.6
1,596,574 - -2.7
1,596,842 + Ga0059261_1517 0.33 +0.2
1,596,842 + Ga0059261_1517 0.33 -0.7
1,596,843 - Ga0059261_1517 0.33 +1.0
1,596,855 + Ga0059261_1517 0.36 +0.6
1,596,856 - Ga0059261_1517 0.36 -2.0
1,596,951 + Ga0059261_1517 0.55 -2.3
1,597,040 - Ga0059261_1517 0.74 +0.2
1,597,040 - Ga0059261_1517 0.74 -1.1
1,597,042 + Ga0059261_1517 0.74 -0.0
1,597,042 + Ga0059261_1517 0.74 -0.8
1,597,042 + Ga0059261_1517 0.74 -0.5
1,597,042 + Ga0059261_1517 0.74 +0.1
1,597,043 - Ga0059261_1517 0.74 +1.0
1,597,043 - Ga0059261_1517 0.74 -0.5
1,597,043 - Ga0059261_1517 0.74 +0.1
1,597,043 - Ga0059261_1517 0.74 +0.1
1,597,189 + -0.0
1,597,201 + -0.1
1,597,202 - +0.7
1,597,202 - +0.3
1,597,202 - +0.7
1,597,367 + Ga0059261_1518 0.25 +0.1
1,597,367 + Ga0059261_1518 0.25 -0.3
1,597,368 - Ga0059261_1518 0.26 -2.1
1,597,550 + Ga0059261_1518 0.58 +0.0
1,597,695 + Ga0059261_1518 0.84 -0.2
1,597,695 + Ga0059261_1518 0.84 -0.3
1,597,695 + Ga0059261_1518 0.84 -0.4
1,597,695 + Ga0059261_1518 0.84 +0.3
1,597,695 + Ga0059261_1518 0.84 -0.4
1,597,695 + Ga0059261_1518 0.84 +0.4
1,597,695 + Ga0059261_1518 0.84 -0.1
1,597,695 + Ga0059261_1518 0.84 -1.5
1,597,696 - Ga0059261_1518 0.84 -0.5
1,597,696 - Ga0059261_1518 0.84 -2.1
1,597,696 - Ga0059261_1518 0.84 +0.5
1,597,698 + Ga0059261_1518 0.84 -0.3
1,597,698 + Ga0059261_1518 0.84 -0.1
1,597,698 + Ga0059261_1518 0.84 -0.0
1,597,698 + Ga0059261_1518 0.84 -0.3
1,597,699 - Ga0059261_1518 0.84 -2.1
1,597,699 - Ga0059261_1518 0.84 -0.5
1,597,699 - Ga0059261_1518 0.84 -1.5
1,597,699 - Ga0059261_1518 0.84 -0.0
1,597,699 - Ga0059261_1518 0.84 -1.1
1,598,085 + Ga0059261_1519 0.50 -0.0
1,598,086 - Ga0059261_1519 0.51 -0.5
1,598,086 - Ga0059261_1519 0.51 -0.1
1,598,288 + Ga0059261_1519 0.84 -0.3
1,598,288 + Ga0059261_1519 0.84 -0.6
1,598,291 + Ga0059261_1519 0.85 +0.2

Or see this region's nucleotide sequence