Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0350

Experiment: Paraquat dichloride 0.045 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0348 and Ga0059261_0349 are separated by 329 nucleotidesGa0059261_0349 and Ga0059261_0350 are separated by 25 nucleotidesGa0059261_0350 and Ga0059261_0351 overlap by 4 nucleotides Ga0059261_0348: Ga0059261_0348 - protein translocase, SecG subunit, at 336,971 to 337,333 _0348 Ga0059261_0349: Ga0059261_0349 - MarR family, at 337,663 to 338,022 _0349 Ga0059261_0350: Ga0059261_0350 - Bacterial SH3 domain, at 338,048 to 338,332 _0350 Ga0059261_0351: Ga0059261_0351 - N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data), at 338,329 to 339,261 _0351 Position (kb) 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1at 337.590 kb on + strandat 337.625 kb on + strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.626 kb on - strandat 337.629 kb on + strandat 337.629 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.688 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.690 kb on + strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.691 kb on - strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.692 kb on + strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.693 kb on - strandat 337.704 kb on + strand, within Ga0059261_0349at 337.704 kb on + strand, within Ga0059261_0349at 337.705 kb on - strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.717 kb on + strand, within Ga0059261_0349at 337.777 kb on + strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.778 kb on - strand, within Ga0059261_0349at 337.860 kb on + strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.861 kb on - strand, within Ga0059261_0349at 337.880 kb on - strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.932 kb on + strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 337.933 kb on - strand, within Ga0059261_0349at 338.021 kb on - strandat 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.129 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strand, within Ga0059261_0350at 338.147 kb on + strandat 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.148 kb on - strand, within Ga0059261_0350at 338.297 kb on + strand, within Ga0059261_0350at 338.298 kb on - strand, within Ga0059261_0350at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.602 kb on + strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.603 kb on - strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.656 kb on + strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.657 kb on - strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.839 kb on + strand, within Ga0059261_0351at 338.840 kb on - strand, within Ga0059261_0351at 338.935 kb on + strand, within Ga0059261_0351at 339.028 kb on + strand, within Ga0059261_0351at 339.028 kb on + strand, within Ga0059261_0351at 339.029 kb on - strand, within Ga0059261_0351at 339.029 kb on - strand, within Ga0059261_0351at 339.259 kb on + strandat 339.259 kb on + strandat 339.259 kb on + strandat 339.260 kb on - strandat 339.260 kb on - strandat 339.260 kb on - strandat 339.260 kb on - strandat 339.260 kb on - strandat 339.277 kb on + strandat 339.277 kb on + strandat 339.277 kb on + strandat 339.277 kb on + strandat 339.277 kb on + strandat 339.277 kb on + strandat 339.278 kb on - strandat 339.278 kb on - strandat 339.278 kb on - strandat 339.278 kb on - strandat 339.278 kb on - strandat 339.282 kb on + strandat 339.290 kb on + strandat 339.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.045 mg/ml
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337,590 + -1.5
337,625 + -0.0
337,626 - -1.4
337,626 - -0.7
337,626 - -1.0
337,629 + -0.4
337,629 + -0.6
337,688 + -2.0
337,688 + -0.2
337,688 + -0.7
337,690 + -2.2
337,690 + -2.6
337,690 + -3.4
337,690 + -1.2
337,690 + +0.2
337,690 + -1.2
337,690 + -1.0
337,690 + -1.0
337,690 + -1.5
337,691 - -0.7
337,691 - +0.3
337,691 - -2.4
337,691 - -2.5
337,692 + -1.5
337,692 + -2.0
337,692 + -3.5
337,692 + -2.0
337,693 - -1.0
337,693 - -1.6
337,693 - -0.9
337,693 - -1.0
337,693 - -1.7
337,693 - -0.5
337,693 - -2.4
337,704 + Ga0059261_0349 0.11 -0.2
337,704 + Ga0059261_0349 0.11 -2.4
337,705 - Ga0059261_0349 0.12 -0.2
337,717 + Ga0059261_0349 0.15 -1.8
337,717 + Ga0059261_0349 0.15 -1.2
337,717 + Ga0059261_0349 0.15 -2.1
337,777 + Ga0059261_0349 0.32 -2.8
337,778 - Ga0059261_0349 0.32 -1.7
337,778 - Ga0059261_0349 0.32 +0.3
337,860 + Ga0059261_0349 0.55 -1.0
337,861 - Ga0059261_0349 0.55 -1.0
337,861 - Ga0059261_0349 0.55 -1.5
337,880 - Ga0059261_0349 0.60 -1.1
337,932 + Ga0059261_0349 0.75 +0.3
337,932 + Ga0059261_0349 0.75 +0.1
337,933 - Ga0059261_0349 0.75 -2.7
337,933 - Ga0059261_0349 0.75 -1.6
337,933 - Ga0059261_0349 0.75 -2.2
338,021 - -0.4
338,129 + Ga0059261_0350 0.28 +0.2
338,129 + Ga0059261_0350 0.28 -0.3
338,129 + Ga0059261_0350 0.28 +0.3
338,147 + Ga0059261_0350 0.35 -0.1
338,147 + Ga0059261_0350 0.35 -0.5
338,147 + Ga0059261_0350 0.35 +0.4
338,147 + Ga0059261_0350 0.35 +0.6
338,147 + Ga0059261_0350 0.35 -0.1
338,147 + Ga0059261_0350 0.35 +0.8
338,147 + Ga0059261_0350 0.35 +0.0
338,147 + Ga0059261_0350 0.35 +1.3
338,147 + Ga0059261_0350 0.35 +0.9
338,147 + +1.3
338,148 - Ga0059261_0350 0.35 -0.1
338,148 - Ga0059261_0350 0.35 -0.5
338,148 - Ga0059261_0350 0.35 +1.6
338,148 - Ga0059261_0350 0.35 +1.3
338,297 + Ga0059261_0350 0.87 +0.2
338,298 - Ga0059261_0350 0.88 +0.3
338,602 + Ga0059261_0351 0.29 -0.3
338,602 + Ga0059261_0351 0.29 -0.2
338,602 + Ga0059261_0351 0.29 +0.2
338,603 - Ga0059261_0351 0.29 -0.1
338,603 - Ga0059261_0351 0.29 -0.3
338,603 - Ga0059261_0351 0.29 +0.3
338,603 - Ga0059261_0351 0.29 -0.5
338,656 + Ga0059261_0351 0.35 -0.1
338,656 + Ga0059261_0351 0.35 -0.3
338,656 + Ga0059261_0351 0.35 -0.6
338,656 + Ga0059261_0351 0.35 -0.2
338,656 + Ga0059261_0351 0.35 -0.4
338,656 + Ga0059261_0351 0.35 +0.3
338,656 + Ga0059261_0351 0.35 -0.1
338,656 + Ga0059261_0351 0.35 -1.7
338,657 - Ga0059261_0351 0.35 -0.7
338,657 - Ga0059261_0351 0.35 +0.2
338,657 - Ga0059261_0351 0.35 +0.1
338,657 - Ga0059261_0351 0.35 +0.8
338,839 + Ga0059261_0351 0.55 +0.3
338,839 + Ga0059261_0351 0.55 -0.0
338,839 + Ga0059261_0351 0.55 -0.2
338,840 - Ga0059261_0351 0.55 +0.4
338,935 + Ga0059261_0351 0.65 +0.8
339,028 + Ga0059261_0351 0.75 -0.5
339,028 + Ga0059261_0351 0.75 -0.3
339,029 - Ga0059261_0351 0.75 +0.2
339,029 - Ga0059261_0351 0.75 -1.3
339,259 + -0.7
339,259 + -0.0
339,259 + -0.1
339,260 - +0.6
339,260 - -0.2
339,260 - -0.5
339,260 - +0.5
339,260 - -1.1
339,277 + -0.7
339,277 + -0.7
339,277 + +0.1
339,277 + +1.1
339,277 + -0.3
339,277 + +0.2
339,278 - +0.5
339,278 - +0.5
339,278 - +0.7
339,278 - -0.0
339,278 - +0.5
339,282 + -0.2
339,290 + -0.3
339,291 - -0.8

Or see this region's nucleotide sequence