Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0286

Experiment: Paraquat dichloride 0.045 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0285 and Ga0059261_0286 are separated by 6 nucleotidesGa0059261_0286 and Ga0059261_0287 are separated by 145 nucleotidesGa0059261_0287 and Ga0059261_0288 are separated by 90 nucleotides Ga0059261_0285: Ga0059261_0285 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 271,137 to 272,795 _0285 Ga0059261_0286: Ga0059261_0286 - Helix-turn-helix domain, at 272,802 to 273,143 _0286 Ga0059261_0287: Ga0059261_0287 - hypothetical protein, at 273,289 to 273,459 _0287 Ga0059261_0288: Ga0059261_0288 - Methyltransferase domain, at 273,550 to 274,146 _0288 Ga0059261_0289: Ga0059261_0289 - thiamine biosynthesis protein ThiS, at 274,143 to 275,153 _0289 Position (kb) 272 273 274Strain fitness (log2 ratio) -1 0 1at 271.998 kb on + strandat 271.999 kb on - strand, within Ga0059261_0285at 271.999 kb on - strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.076 kb on + strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.077 kb on - strand, within Ga0059261_0285at 272.332 kb on - strand, within Ga0059261_0285at 272.340 kb on + strand, within Ga0059261_0285at 272.340 kb on + strand, within Ga0059261_0285at 272.340 kb on + strand, within Ga0059261_0285at 272.341 kb on - strand, within Ga0059261_0285at 272.341 kb on - strand, within Ga0059261_0285at 272.388 kb on + strand, within Ga0059261_0285at 272.388 kb on + strand, within Ga0059261_0285at 272.388 kb on + strand, within Ga0059261_0285at 272.547 kb on + strandat 272.547 kb on + strand, within Ga0059261_0285at 272.548 kb on - strand, within Ga0059261_0285at 272.603 kb on + strand, within Ga0059261_0285at 272.603 kb on + strand, within Ga0059261_0285at 272.603 kb on + strandat 272.604 kb on - strand, within Ga0059261_0285at 272.604 kb on - strand, within Ga0059261_0285at 272.643 kb on + strandat 272.644 kb on - strandat 272.644 kb on - strandat 272.644 kb on - strandat 272.644 kb on - strandat 272.644 kb on - strandat 272.793 kb on + strandat 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.914 kb on + strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.915 kb on - strand, within Ga0059261_0286at 272.965 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.043 kb on + strand, within Ga0059261_0286at 273.044 kb on - strandat 273.044 kb on - strand, within Ga0059261_0286at 273.044 kb on - strand, within Ga0059261_0286at 273.044 kb on - strand, within Ga0059261_0286at 273.044 kb on - strand, within Ga0059261_0286at 273.044 kb on - strand, within Ga0059261_0286at 273.044 kb on - strand, within Ga0059261_0286at 273.202 kb on - strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.270 kb on + strandat 273.271 kb on - strandat 273.271 kb on - strandat 273.271 kb on - strandat 273.271 kb on - strandat 273.271 kb on - strandat 273.271 kb on - strandat 273.280 kb on + strandat 273.280 kb on + strandat 273.280 kb on + strandat 273.281 kb on - strandat 273.282 kb on + strandat 273.283 kb on - strandat 273.283 kb on - strandat 273.295 kb on - strandat 273.295 kb on - strandat 273.295 kb on - strandat 273.393 kb on + strand, within Ga0059261_0287at 273.393 kb on + strand, within Ga0059261_0287at 273.393 kb on + strand, within Ga0059261_0287at 273.393 kb on + strand, within Ga0059261_0287at 273.393 kb on + strand, within Ga0059261_0287at 273.393 kb on + strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.394 kb on - strand, within Ga0059261_0287at 273.574 kb on + strandat 273.574 kb on + strandat 273.574 kb on + strandat 273.574 kb on + strandat 273.686 kb on + strand, within Ga0059261_0288at 273.686 kb on + strand, within Ga0059261_0288at 273.686 kb on + strand, within Ga0059261_0288at 273.686 kb on + strand, within Ga0059261_0288at 273.686 kb on + strand, within Ga0059261_0288at 273.686 kb on + strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.687 kb on - strand, within Ga0059261_0288at 273.718 kb on + strand, within Ga0059261_0288at 273.718 kb on + strand, within Ga0059261_0288at 273.718 kb on + strand, within Ga0059261_0288at 273.719 kb on - strand, within Ga0059261_0288at 273.853 kb on + strand, within Ga0059261_0288at 273.853 kb on + strand, within Ga0059261_0288at 273.854 kb on - strand, within Ga0059261_0288at 273.967 kb on - strand, within Ga0059261_0288at 274.045 kb on + strand, within Ga0059261_0288

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.045 mg/ml
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271,998 + -0.7
271,999 - Ga0059261_0285 0.52 -0.2
271,999 - Ga0059261_0285 0.52 -0.6
272,076 + Ga0059261_0285 0.57 -0.7
272,076 + Ga0059261_0285 0.57 -0.4
272,076 + Ga0059261_0285 0.57 -1.4
272,076 + Ga0059261_0285 0.57 +0.2
272,076 + Ga0059261_0285 0.57 -0.4
272,077 - Ga0059261_0285 0.57 +0.6
272,077 - Ga0059261_0285 0.57 +0.6
272,077 - Ga0059261_0285 0.57 +0.2
272,077 - Ga0059261_0285 0.57 -0.7
272,077 - Ga0059261_0285 0.57 +0.5
272,077 - Ga0059261_0285 0.57 -1.1
272,077 - Ga0059261_0285 0.57 -0.0
272,077 - Ga0059261_0285 0.57 -0.4
272,332 - Ga0059261_0285 0.72 +0.3
272,340 + Ga0059261_0285 0.73 -0.7
272,340 + Ga0059261_0285 0.73 -0.8
272,340 + Ga0059261_0285 0.73 +0.1
272,341 - Ga0059261_0285 0.73 +0.5
272,341 - Ga0059261_0285 0.73 +0.9
272,388 + Ga0059261_0285 0.75 +0.4
272,388 + Ga0059261_0285 0.75 -1.2
272,388 + Ga0059261_0285 0.75 -0.7
272,547 + +1.3
272,547 + Ga0059261_0285 0.85 -0.0
272,548 - Ga0059261_0285 0.85 -0.3
272,603 + Ga0059261_0285 0.88 +0.9
272,603 + Ga0059261_0285 0.88 -0.6
272,603 + -0.2
272,604 - Ga0059261_0285 0.88 -0.0
272,604 - Ga0059261_0285 0.88 -0.5
272,643 + +0.8
272,644 - -0.8
272,644 - -0.2
272,644 - -0.0
272,644 - +0.1
272,644 - -0.5
272,793 + -0.2
272,914 + Ga0059261_0286 0.33 +0.4
272,914 + Ga0059261_0286 0.33 +0.2
272,914 + Ga0059261_0286 0.33 +0.3
272,914 + Ga0059261_0286 0.33 +0.6
272,914 + Ga0059261_0286 0.33 +0.0
272,914 + Ga0059261_0286 0.33 +1.2
272,914 + Ga0059261_0286 0.33 +1.1
272,915 - Ga0059261_0286 0.33 +0.1
272,915 - Ga0059261_0286 0.33 -0.2
272,915 - Ga0059261_0286 0.33 +0.8
272,915 - Ga0059261_0286 0.33 -0.1
272,915 - Ga0059261_0286 0.33 -0.3
272,915 - Ga0059261_0286 0.33 +0.5
272,915 - Ga0059261_0286 0.33 +0.0
272,965 + Ga0059261_0286 0.48 -0.4
273,043 + Ga0059261_0286 0.70 -0.3
273,043 + Ga0059261_0286 0.70 -1.4
273,043 + Ga0059261_0286 0.70 +0.2
273,043 + Ga0059261_0286 0.70 +0.6
273,043 + Ga0059261_0286 0.70 -0.5
273,043 + Ga0059261_0286 0.70 +0.1
273,044 - +1.3
273,044 - Ga0059261_0286 0.71 +0.1
273,044 - Ga0059261_0286 0.71 +0.1
273,044 - Ga0059261_0286 0.71 +0.5
273,044 - Ga0059261_0286 0.71 -0.2
273,044 - Ga0059261_0286 0.71 +0.5
273,044 - Ga0059261_0286 0.71 +0.1
273,202 - +0.2
273,270 + +0.0
273,270 + -1.4
273,270 + +0.1
273,270 + +0.3
273,270 + +0.1
273,270 + +0.2
273,270 + -0.4
273,270 + +0.2
273,270 + -1.4
273,270 + +0.1
273,270 + +0.2
273,270 + +0.2
273,270 + -0.6
273,270 + -0.2
273,270 + -0.1
273,270 + +0.3
273,271 - -0.5
273,271 - -0.6
273,271 - -0.5
273,271 - -0.5
273,271 - -0.1
273,271 - +0.2
273,280 + +0.0
273,280 + -0.2
273,280 + +1.5
273,281 - -0.6
273,282 + +1.2
273,283 - -0.1
273,283 - -1.1
273,295 - -0.2
273,295 - -1.5
273,295 - -0.4
273,393 + Ga0059261_0287 0.61 +0.0
273,393 + Ga0059261_0287 0.61 +0.5
273,393 + Ga0059261_0287 0.61 -0.7
273,393 + Ga0059261_0287 0.61 +0.1
273,393 + Ga0059261_0287 0.61 +0.1
273,393 + Ga0059261_0287 0.61 +0.6
273,394 - Ga0059261_0287 0.61 -0.1
273,394 - Ga0059261_0287 0.61 -0.4
273,394 - Ga0059261_0287 0.61 -0.2
273,394 - Ga0059261_0287 0.61 +0.0
273,394 - Ga0059261_0287 0.61 +0.3
273,394 - Ga0059261_0287 0.61 -0.1
273,394 - Ga0059261_0287 0.61 +0.4
273,394 - Ga0059261_0287 0.61 +0.3
273,394 - Ga0059261_0287 0.61 -0.3
273,394 - Ga0059261_0287 0.61 +0.0
273,394 - Ga0059261_0287 0.61 +0.4
273,574 + +1.1
273,574 + +0.0
273,574 + -0.5
273,574 + +0.2
273,686 + Ga0059261_0288 0.23 +1.2
273,686 + Ga0059261_0288 0.23 +0.0
273,686 + Ga0059261_0288 0.23 +0.6
273,686 + Ga0059261_0288 0.23 -0.1
273,686 + Ga0059261_0288 0.23 +0.0
273,686 + Ga0059261_0288 0.23 +0.1
273,687 - Ga0059261_0288 0.23 +0.3
273,687 - Ga0059261_0288 0.23 -0.2
273,687 - Ga0059261_0288 0.23 -0.3
273,687 - Ga0059261_0288 0.23 -1.2
273,687 - Ga0059261_0288 0.23 -0.8
273,687 - Ga0059261_0288 0.23 +0.2
273,687 - Ga0059261_0288 0.23 -0.1
273,687 - Ga0059261_0288 0.23 -0.4
273,687 - Ga0059261_0288 0.23 +1.3
273,718 + Ga0059261_0288 0.28 -0.5
273,718 + Ga0059261_0288 0.28 +0.3
273,718 + Ga0059261_0288 0.28 -1.0
273,719 - Ga0059261_0288 0.28 +0.2
273,853 + Ga0059261_0288 0.51 -0.7
273,853 + Ga0059261_0288 0.51 +0.0
273,854 - Ga0059261_0288 0.51 -0.1
273,967 - Ga0059261_0288 0.70 -0.2
274,045 + Ga0059261_0288 0.83 -0.1

Or see this region's nucleotide sequence