Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0065

Experiment: Paraquat dichloride 0.045 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0063 and Ga0059261_0064 overlap by 4 nucleotidesGa0059261_0064 and Ga0059261_0065 are separated by 11 nucleotidesGa0059261_0065 and Ga0059261_0066 are separated by 36 nucleotides Ga0059261_0063: Ga0059261_0063 - Ribonuclease I, at 54,851 to 55,549 _0063 Ga0059261_0064: Ga0059261_0064 - Domain of unknown function (DUF4112), at 55,546 to 55,965 _0064 Ga0059261_0065: Ga0059261_0065 - ABC-type dipeptide transport system, periplasmic component, at 55,977 to 57,485 _0065 Ga0059261_0066: Ga0059261_0066 - ketol-acid reductoisomerase (EC 1.1.1.86), at 57,522 to 58,541 _0066 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -1 0 1 2at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strandat 55.003 kb on + strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.142 kb on + strand, within Ga0059261_0063at 55.143 kb on - strand, within Ga0059261_0063at 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strand, within Ga0059261_0063at 55.229 kb on + strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strandat 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.271 kb on + strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.311 kb on - strand, within Ga0059261_0063at 55.547 kb on + strandat 55.547 kb on + strandat 55.547 kb on + strandat 55.548 kb on - strandat 55.752 kb on + strand, within Ga0059261_0064at 55.752 kb on + strand, within Ga0059261_0064at 55.752 kb on + strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.780 kb on - strand, within Ga0059261_0064at 55.780 kb on - strand, within Ga0059261_0064at 55.920 kb on - strand, within Ga0059261_0064at 55.920 kb on - strand, within Ga0059261_0064at 56.091 kb on - strandat 56.092 kb on + strandat 56.092 kb on + strandat 56.092 kb on + strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.227 kb on + strand, within Ga0059261_0065at 56.228 kb on - strand, within Ga0059261_0065at 56.228 kb on - strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.732 kb on - strand, within Ga0059261_0065at 57.175 kb on + strand, within Ga0059261_0065at 57.175 kb on + strand, within Ga0059261_0065at 57.175 kb on + strand, within Ga0059261_0065at 57.175 kb on + strand, within Ga0059261_0065at 57.176 kb on - strand, within Ga0059261_0065at 57.447 kb on + strandat 57.447 kb on + strandat 57.447 kb on + strandat 57.447 kb on + strandat 57.448 kb on - strandat 57.448 kb on - strandat 57.448 kb on - strandat 57.448 kb on - strandat 57.448 kb on - strandat 57.510 kb on + strandat 57.510 kb on + strandat 57.510 kb on + strandat 57.510 kb on + strandat 57.511 kb on - strandat 57.511 kb on - strandat 57.511 kb on - strandat 57.511 kb on - strandat 57.523 kb on + strandat 57.523 kb on + strandat 57.523 kb on + strandat 57.523 kb on + strandat 57.524 kb on - strandat 57.524 kb on - strandat 57.524 kb on - strandat 57.524 kb on - strandat 57.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.045 mg/ml
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55,003 + Ga0059261_0063 0.22 -0.5
55,003 + Ga0059261_0063 0.22 -0.9
55,003 + Ga0059261_0063 0.22 +0.7
55,003 + +0.8
55,003 + Ga0059261_0063 0.22 +0.8
55,004 - Ga0059261_0063 0.22 -0.4
55,004 - Ga0059261_0063 0.22 -0.3
55,004 - Ga0059261_0063 0.22 -0.1
55,142 + Ga0059261_0063 0.42 -0.9
55,143 - Ga0059261_0063 0.42 -0.2
55,143 - -0.1
55,143 - -0.7
55,143 - Ga0059261_0063 0.42 -0.9
55,229 + Ga0059261_0063 0.54 +0.2
55,230 - Ga0059261_0063 0.54 -0.5
55,230 - +1.3
55,230 - Ga0059261_0063 0.54 -0.1
55,230 - Ga0059261_0063 0.54 -0.1
55,230 - Ga0059261_0063 0.54 +0.3
55,230 - Ga0059261_0063 0.54 -0.5
55,230 - Ga0059261_0063 0.54 +0.0
55,271 + Ga0059261_0063 0.60 +0.0
55,272 - Ga0059261_0063 0.60 -0.6
55,272 - Ga0059261_0063 0.60 -0.8
55,295 + Ga0059261_0063 0.64 +0.3
55,295 + Ga0059261_0063 0.64 -0.2
55,296 - Ga0059261_0063 0.64 +0.8
55,296 - Ga0059261_0063 0.64 -0.3
55,296 - Ga0059261_0063 0.64 +0.5
55,296 - Ga0059261_0063 0.64 +0.6
55,311 - Ga0059261_0063 0.66 +0.1
55,547 + -1.5
55,547 + -1.2
55,547 + +0.4
55,548 - -0.2
55,752 + Ga0059261_0064 0.49 -0.1
55,752 + Ga0059261_0064 0.49 -0.4
55,752 + Ga0059261_0064 0.49 +0.5
55,753 - Ga0059261_0064 0.49 +0.2
55,753 - Ga0059261_0064 0.49 -1.2
55,753 - Ga0059261_0064 0.49 +0.5
55,753 - Ga0059261_0064 0.49 -0.2
55,754 + Ga0059261_0064 0.50 -1.2
55,754 + Ga0059261_0064 0.50 +1.9
55,754 + Ga0059261_0064 0.50 +0.1
55,754 + Ga0059261_0064 0.50 -0.1
55,754 + Ga0059261_0064 0.50 +0.8
55,755 - Ga0059261_0064 0.50 +0.3
55,755 - Ga0059261_0064 0.50 -0.0
55,755 - Ga0059261_0064 0.50 -0.1
55,755 - Ga0059261_0064 0.50 -0.7
55,755 - Ga0059261_0064 0.50 +0.3
55,755 - Ga0059261_0064 0.50 -0.0
55,780 - Ga0059261_0064 0.56 +0.1
55,780 - Ga0059261_0064 0.56 +1.1
55,920 - Ga0059261_0064 0.89 -0.7
55,920 - Ga0059261_0064 0.89 +0.0
56,091 - +0.1
56,092 + -0.5
56,092 + +0.5
56,092 + +0.2
56,093 - +0.1
56,093 - +0.2
56,093 - -0.1
56,093 - -1.1
56,227 + Ga0059261_0065 0.17 +0.3
56,228 - Ga0059261_0065 0.17 +1.1
56,228 - Ga0059261_0065 0.17 -0.5
56,245 + Ga0059261_0065 0.18 +0.1
56,245 + Ga0059261_0065 0.18 -0.1
56,245 + Ga0059261_0065 0.18 +0.3
56,246 - Ga0059261_0065 0.18 +0.3
56,246 - Ga0059261_0065 0.18 -0.6
56,246 - Ga0059261_0065 0.18 -0.1
56,731 + Ga0059261_0065 0.50 +0.7
56,731 + Ga0059261_0065 0.50 +0.9
56,731 + Ga0059261_0065 0.50 +0.0
56,732 - Ga0059261_0065 0.50 +0.2
57,175 + Ga0059261_0065 0.79 +0.6
57,175 + Ga0059261_0065 0.79 -0.8
57,175 + Ga0059261_0065 0.79 +0.5
57,175 + Ga0059261_0065 0.79 +0.2
57,176 - Ga0059261_0065 0.79 -0.2
57,447 + -0.5
57,447 + +1.2
57,447 + +0.4
57,447 + -0.3
57,448 - -1.1
57,448 - -0.0
57,448 - -0.1
57,448 - -0.2
57,448 - +0.9
57,510 + +0.3
57,510 + +0.5
57,510 + -0.2
57,510 + +0.3
57,511 - -0.2
57,511 - -0.3
57,511 - -0.1
57,511 - -0.9
57,523 + -0.5
57,523 + -0.9
57,523 + -0.3
57,523 + -1.5
57,524 - +0.5
57,524 - +0.1
57,524 - +0.0
57,524 - +0.3
57,524 - +0.1

Or see this region's nucleotide sequence