Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13270

Experiment: Recovery broth with Bicyclomycin 0.07 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS13265 and BBR_RS20750 are separated by 137 nucleotidesBBR_RS20750 and BBR_RS20755 are separated by 1 nucleotidesBBR_RS20755 and BBR_RS13270 are separated by 131 nucleotidesBBR_RS13270 and BBR_RS13275 are separated by 11 nucleotides BBR_RS13265: BBR_RS13265 - peptide methionine sulfoxide reductase msrA/msrB, at 750,416 to 750,907 _RS13265 BBR_RS20750: BBR_RS20750 - GntR family transcriptional regulator, at 751,045 to 751,170 _RS20750 BBR_RS20755: BBR_RS20755 - IS3 family transposase, at 751,172 to 751,470 _RS20755 BBR_RS13270: BBR_RS13270 - ABC transporter ATP-binding protein, at 751,602 to 752,414 _RS13270 BBR_RS13275: BBR_RS13275 - hypothetical protein, at 752,426 to 753,721 _RS13275 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 750.619 kb on - strand, within BBR_RS13265at 750.652 kb on + strand, within BBR_RS13265at 750.678 kb on + strand, within BBR_RS13265at 750.678 kb on + strand, within BBR_RS13265at 750.705 kb on - strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.715 kb on + strand, within BBR_RS13265at 750.716 kb on - strand, within BBR_RS13265at 750.721 kb on - strand, within BBR_RS13265at 750.786 kb on + strand, within BBR_RS13265at 750.794 kb on - strand, within BBR_RS13265at 750.814 kb on + strand, within BBR_RS13265at 750.821 kb on + strand, within BBR_RS13265at 750.837 kb on - strand, within BBR_RS13265at 750.840 kb on - strand, within BBR_RS13265at 750.847 kb on - strand, within BBR_RS13265at 750.847 kb on - strand, within BBR_RS13265at 750.854 kb on + strand, within BBR_RS13265at 750.854 kb on + strand, within BBR_RS13265at 750.902 kb on + strandat 750.902 kb on + strandat 750.910 kb on - strandat 750.910 kb on - strandat 750.921 kb on - strandat 750.931 kb on - strandat 750.973 kb on + strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.982 kb on - strandat 751.088 kb on + strand, within BBR_RS20750at 751.108 kb on - strand, within BBR_RS20750at 751.108 kb on - strand, within BBR_RS20750at 751.160 kb on + strandat 751.160 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.170 kb on - strandat 751.212 kb on - strand, within BBR_RS20755at 751.217 kb on + strand, within BBR_RS20755at 751.217 kb on + strand, within BBR_RS20755at 751.225 kb on - strand, within BBR_RS20755at 751.225 kb on - strand, within BBR_RS20755at 751.230 kb on + strand, within BBR_RS20755at 751.230 kb on + strand, within BBR_RS20755at 751.238 kb on - strand, within BBR_RS20755at 751.293 kb on - strand, within BBR_RS20755at 751.345 kb on - strand, within BBR_RS20755at 751.365 kb on + strand, within BBR_RS20755at 751.373 kb on - strand, within BBR_RS20755at 751.413 kb on + strand, within BBR_RS20755at 751.413 kb on - strand, within BBR_RS20755at 751.413 kb on - strand, within BBR_RS20755at 751.490 kb on + strandat 751.490 kb on + strandat 751.490 kb on + strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.519 kb on + strandat 751.596 kb on - strandat 751.597 kb on + strandat 751.624 kb on + strandat 751.671 kb on + strandat 751.679 kb on - strandat 751.689 kb on - strand, within BBR_RS13270at 751.714 kb on + strand, within BBR_RS13270at 751.742 kb on - strand, within BBR_RS13270at 751.744 kb on + strand, within BBR_RS13270at 751.752 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.761 kb on + strand, within BBR_RS13270at 751.768 kb on + strand, within BBR_RS13270at 751.771 kb on + strand, within BBR_RS13270at 751.775 kb on + strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.843 kb on - strand, within BBR_RS13270at 751.881 kb on + strand, within BBR_RS13270at 751.901 kb on - strand, within BBR_RS13270at 751.951 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 752.055 kb on - strand, within BBR_RS13270at 752.055 kb on - strand, within BBR_RS13270at 752.097 kb on - strand, within BBR_RS13270at 752.107 kb on + strand, within BBR_RS13270at 752.138 kb on + strand, within BBR_RS13270at 752.162 kb on + strand, within BBR_RS13270at 752.170 kb on - strand, within BBR_RS13270at 752.190 kb on - strand, within BBR_RS13270at 752.209 kb on + strand, within BBR_RS13270at 752.217 kb on - strand, within BBR_RS13270at 752.217 kb on - strand, within BBR_RS13270at 752.271 kb on - strand, within BBR_RS13270at 752.301 kb on + strand, within BBR_RS13270at 752.307 kb on - strand, within BBR_RS13270at 752.361 kb on + strandat 752.366 kb on + strandat 752.366 kb on + strandat 752.366 kb on + strandat 752.366 kb on + strandat 752.388 kb on + strandat 752.389 kb on - strandat 752.408 kb on + strandat 752.408 kb on + strandat 752.468 kb on - strandat 752.492 kb on - strandat 752.517 kb on - strandat 752.556 kb on + strand, within BBR_RS13275at 752.564 kb on - strand, within BBR_RS13275at 752.605 kb on - strand, within BBR_RS13275at 752.626 kb on - strand, within BBR_RS13275at 752.663 kb on + strand, within BBR_RS13275at 752.669 kb on + strand, within BBR_RS13275at 752.783 kb on + strand, within BBR_RS13275at 752.790 kb on - strand, within BBR_RS13275at 752.811 kb on - strand, within BBR_RS13275at 752.813 kb on + strand, within BBR_RS13275at 752.813 kb on - strand, within BBR_RS13275at 752.821 kb on - strand, within BBR_RS13275at 752.844 kb on - strand, within BBR_RS13275at 752.850 kb on - strand, within BBR_RS13275at 752.852 kb on + strand, within BBR_RS13275at 752.912 kb on - strand, within BBR_RS13275at 752.912 kb on - strand, within BBR_RS13275at 752.984 kb on + strand, within BBR_RS13275at 752.999 kb on + strand, within BBR_RS13275at 753.022 kb on + strand, within BBR_RS13275at 753.037 kb on + strand, within BBR_RS13275at 753.045 kb on - strand, within BBR_RS13275at 753.082 kb on + strand, within BBR_RS13275at 753.082 kb on + strand, within BBR_RS13275at 753.097 kb on + strand, within BBR_RS13275at 753.105 kb on + strand, within BBR_RS13275at 753.109 kb on + strand, within BBR_RS13275at 753.157 kb on - strand, within BBR_RS13275at 753.194 kb on + strand, within BBR_RS13275at 753.200 kb on - strand, within BBR_RS13275at 753.204 kb on + strand, within BBR_RS13275at 753.204 kb on + strand, within BBR_RS13275at 753.212 kb on - strand, within BBR_RS13275at 753.216 kb on + strand, within BBR_RS13275at 753.226 kb on + strand, within BBR_RS13275at 753.249 kb on - strand, within BBR_RS13275at 753.292 kb on - strand, within BBR_RS13275at 753.294 kb on - strand, within BBR_RS13275at 753.350 kb on - strand, within BBR_RS13275at 753.375 kb on + strand, within BBR_RS13275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Bicyclomycin 0.07 mM
remove
750,619 - BBR_RS13265 0.41 +0.8
750,652 + BBR_RS13265 0.48 +0.1
750,678 + BBR_RS13265 0.53 +1.5
750,678 + BBR_RS13265 0.53 -1.0
750,705 - BBR_RS13265 0.59 +0.6
750,713 + BBR_RS13265 0.60 -0.7
750,713 + BBR_RS13265 0.60 +0.4
750,713 + BBR_RS13265 0.60 -0.6
750,713 + BBR_RS13265 0.60 -1.0
750,715 + BBR_RS13265 0.61 +1.4
750,716 - BBR_RS13265 0.61 -0.4
750,721 - BBR_RS13265 0.62 -1.4
750,786 + BBR_RS13265 0.75 +1.0
750,794 - BBR_RS13265 0.77 -2.6
750,814 + BBR_RS13265 0.81 +0.9
750,821 + BBR_RS13265 0.82 +0.5
750,837 - BBR_RS13265 0.86 +0.1
750,840 - BBR_RS13265 0.86 -0.0
750,847 - BBR_RS13265 0.88 +0.7
750,847 - BBR_RS13265 0.88 +0.2
750,854 + BBR_RS13265 0.89 -0.9
750,854 + BBR_RS13265 0.89 -0.5
750,902 + -1.0
750,902 + +1.0
750,910 - +0.7
750,910 - +0.3
750,921 - -1.0
750,931 - +0.6
750,973 + +0.7
750,981 - -1.0
750,981 - -0.0
750,981 - +1.5
750,982 - +0.3
751,088 + BBR_RS20750 0.34 -1.2
751,108 - BBR_RS20750 0.50 +0.7
751,108 - BBR_RS20750 0.50 -0.2
751,160 + +0.6
751,160 + +0.8
751,162 + +1.4
751,162 + -0.3
751,162 + -0.1
751,162 + -1.1
751,170 - +0.7
751,212 - BBR_RS20755 0.13 -0.2
751,217 + BBR_RS20755 0.15 -0.8
751,217 + BBR_RS20755 0.15 -0.4
751,225 - BBR_RS20755 0.18 +0.1
751,225 - BBR_RS20755 0.18 +0.2
751,230 + BBR_RS20755 0.19 +0.1
751,230 + BBR_RS20755 0.19 +0.1
751,238 - BBR_RS20755 0.22 -0.2
751,293 - BBR_RS20755 0.40 +1.7
751,345 - BBR_RS20755 0.58 -0.6
751,365 + BBR_RS20755 0.65 -1.0
751,373 - BBR_RS20755 0.67 -0.2
751,413 + BBR_RS20755 0.81 -0.1
751,413 - BBR_RS20755 0.81 -0.6
751,413 - BBR_RS20755 0.81 +2.4
751,490 + -0.8
751,490 + +0.7
751,490 + -0.5
751,498 - -0.4
751,498 - +1.0
751,498 - +0.2
751,498 - +1.2
751,498 - +0.3
751,498 - +0.4
751,519 + +0.1
751,596 - +0.7
751,597 + +1.8
751,624 + -0.7
751,671 + +0.5
751,679 - +0.0
751,689 - BBR_RS13270 0.11 -1.2
751,714 + BBR_RS13270 0.14 -1.0
751,742 - BBR_RS13270 0.17 +1.0
751,744 + BBR_RS13270 0.17 +2.3
751,752 + BBR_RS13270 0.18 +1.6
751,754 + BBR_RS13270 0.19 -0.1
751,754 + BBR_RS13270 0.19 -1.2
751,754 + BBR_RS13270 0.19 -1.6
751,761 + BBR_RS13270 0.20 +0.3
751,768 + BBR_RS13270 0.20 +0.9
751,771 + BBR_RS13270 0.21 -1.4
751,775 + BBR_RS13270 0.21 -0.6
751,833 - BBR_RS13270 0.28 -0.5
751,833 - BBR_RS13270 0.28 +0.4
751,833 - BBR_RS13270 0.28 +0.4
751,843 - BBR_RS13270 0.30 +3.5
751,881 + BBR_RS13270 0.34 +0.3
751,901 - BBR_RS13270 0.37 +2.6
751,951 + BBR_RS13270 0.43 +0.4
751,988 + BBR_RS13270 0.47 +0.9
751,988 + BBR_RS13270 0.47 +0.5
751,988 + BBR_RS13270 0.47 -0.2
752,055 - BBR_RS13270 0.56 +0.0
752,055 - BBR_RS13270 0.56 +0.9
752,097 - BBR_RS13270 0.61 -1.1
752,107 + BBR_RS13270 0.62 -0.5
752,138 + BBR_RS13270 0.66 +0.4
752,162 + BBR_RS13270 0.69 +2.3
752,170 - BBR_RS13270 0.70 +0.2
752,190 - BBR_RS13270 0.72 +0.6
752,209 + BBR_RS13270 0.75 -1.9
752,217 - BBR_RS13270 0.76 -0.5
752,217 - BBR_RS13270 0.76 +0.2
752,271 - BBR_RS13270 0.82 +4.2
752,301 + BBR_RS13270 0.86 +1.6
752,307 - BBR_RS13270 0.87 -0.7
752,361 + +0.8
752,366 + +0.6
752,366 + -1.1
752,366 + +0.1
752,366 + -0.6
752,388 + -1.0
752,389 - -0.2
752,408 + -0.2
752,408 + -0.1
752,468 - +2.2
752,492 - +1.3
752,517 - -0.7
752,556 + BBR_RS13275 0.10 -0.4
752,564 - BBR_RS13275 0.11 -0.1
752,605 - BBR_RS13275 0.14 -0.7
752,626 - BBR_RS13275 0.15 -0.1
752,663 + BBR_RS13275 0.18 +0.7
752,669 + BBR_RS13275 0.19 -0.6
752,783 + BBR_RS13275 0.28 -0.1
752,790 - BBR_RS13275 0.28 +0.3
752,811 - BBR_RS13275 0.30 -0.1
752,813 + BBR_RS13275 0.30 -0.6
752,813 - BBR_RS13275 0.30 -0.4
752,821 - BBR_RS13275 0.30 +1.4
752,844 - BBR_RS13275 0.32 +0.8
752,850 - BBR_RS13275 0.33 +0.8
752,852 + BBR_RS13275 0.33 +0.5
752,912 - BBR_RS13275 0.38 -1.8
752,912 - BBR_RS13275 0.38 +0.8
752,984 + BBR_RS13275 0.43 +1.1
752,999 + BBR_RS13275 0.44 -1.7
753,022 + BBR_RS13275 0.46 +0.6
753,037 + BBR_RS13275 0.47 +0.4
753,045 - BBR_RS13275 0.48 -0.7
753,082 + BBR_RS13275 0.51 -0.0
753,082 + BBR_RS13275 0.51 -1.3
753,097 + BBR_RS13275 0.52 -2.2
753,105 + BBR_RS13275 0.52 +0.6
753,109 + BBR_RS13275 0.53 +1.4
753,157 - BBR_RS13275 0.56 -0.7
753,194 + BBR_RS13275 0.59 +0.1
753,200 - BBR_RS13275 0.60 -2.1
753,204 + BBR_RS13275 0.60 +0.7
753,204 + BBR_RS13275 0.60 -1.6
753,212 - BBR_RS13275 0.61 +1.3
753,216 + BBR_RS13275 0.61 -2.5
753,226 + BBR_RS13275 0.62 +0.4
753,249 - BBR_RS13275 0.64 -0.9
753,292 - BBR_RS13275 0.67 +0.8
753,294 - BBR_RS13275 0.67 -0.5
753,350 - BBR_RS13275 0.71 +0.0
753,375 + BBR_RS13275 0.73 -0.2

Or see this region's nucleotide sequence