Strain Fitness in Shewanella loihica PV-4 around Shew_1982

Experiment: Vanillin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2 mM
2,292,906	-				+1.4
2,292,932	+				+0.6
2,293,028	-				+0.4
2,293,028	-				+0.1
2,293,147	-				-0.3
2,293,180	-				+0.9
2,293,717	-				-0.2
2,293,882	+		Shew_1982	0.19	+0.2
2,293,949	+		Shew_1982	0.24	+0.3
2,294,272	-		Shew_1982	0.50	+0.4
2,294,588	-		Shew_1982	0.75	+0.6
2,294,603	-		Shew_1982	0.76	+0.5
2,294,792	-				+0.0
2,294,812	+				+0.3
2,294,830	-				+0.2
2,295,226	+				+0.2
2,295,273	+				+0.1
2,295,350	-				+0.2
2,295,377	+				-0.2
2,295,471	+		Shew_1983	0.15	+0.1
2,295,494	-		Shew_1983	0.17	-0.4
2,295,508	+		Shew_1983	0.17	+0.4
2,295,685	-		Shew_1983	0.29	+0.1
2,295,685	-		Shew_1983	0.29	+0.3
2,295,789	-		Shew_1983	0.35	+0.0
2,295,789	-		Shew_1983	0.35	+0.1