Strain Fitness in Shewanella loihica PV-4 around Shew_1124

Experiment: Vanillin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2 mM
1,298,533	+		Shew_1123	0.43	+0.4
1,298,781	-		Shew_1123	0.66	+0.3
1,298,920	+		Shew_1123	0.78	+0.2
1,298,943	+		Shew_1123	0.80	+0.3
1,298,944	+		Shew_1123	0.80	-0.6
1,299,009	+		Shew_1123	0.86	+0.3
1,299,419	-				+0.3
1,299,464	-				-0.1
1,299,740	-	trmB	Shew_1124	0.48	+0.5
1,299,801	+	trmB	Shew_1124	0.57	-0.3
1,300,247	-		Shew_1125	0.32	+0.5