Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0740 and Shew_0741 are separated by 86 nucleotides Shew_0741 and Shew_0742 are separated by 141 nucleotides Shew_0742 and Shew_0743 are separated by 164 nucleotides
Shew_0740: Shew_0740 - L-serine dehydratase 1 (RefSeq), at 842,057 to 843,424
_0740
Shew_0741: Shew_0741 - GCN5-related N-acetyltransferase (RefSeq), at 843,511 to 843,954
_0741
Shew_0742: Shew_0742 - hypothetical protein (RefSeq), at 844,096 to 844,401
_0742
Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867
_0743
Position (kb) 843
844 Strain fitness (log2 ratio) -1
0
1 at 842.557 kb on - strand, within Shew_0740 at 842.864 kb on - strand, within Shew_0740 at 842.984 kb on - strand, within Shew_0740 at 843.375 kb on + strand at 843.716 kb on + strand, within Shew_0741 at 843.846 kb on + strand, within Shew_0741 at 843.874 kb on - strand, within Shew_0741 at 843.998 kb on - strand at 844.056 kb on - strand at 844.432 kb on + strand at 844.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 842,557 - Shew_0740 0.37 -0.0 842,864 - Shew_0740 0.59 +0.2 842,984 - Shew_0740 0.68 -0.4 843,375 + -0.8 843,716 + Shew_0741 0.46 -0.6 843,846 + Shew_0741 0.75 +0.2 843,874 - Shew_0741 0.82 -0.8 843,998 - -0.1 844,056 - -0.5 844,432 + -0.0 844,447 + +0.1
Or see this region's nucleotide sequence