Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0344 and Shew_0345 are separated by 125 nucleotides Shew_0345 and Shew_0346 overlap by 4 nucleotides Shew_0346 and Shew_0347 are separated by 2 nucleotides
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Shew_0347: Shew_0347 - cytochrome c assembly protein (RefSeq), at 394,380 to 396,371
_0347
Position (kb) 393
394 Strain fitness (log2 ratio) -1
0
1 at 392.303 kb on + strand, within Shew_0344 at 392.318 kb on - strand, within Shew_0344 at 392.543 kb on + strand, within Shew_0344 at 392.713 kb on - strand, within Shew_0344 at 392.747 kb on - strand, within Shew_0344 at 392.957 kb on - strand, within Shew_0344 at 393.073 kb on + strand at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346 at 394.217 kb on - strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.232 kb on - strand, within Shew_0346 at 394.618 kb on + strand, within Shew_0347
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 392,303 + Shew_0344 0.43 -0.2 392,318 - Shew_0344 0.44 -0.3 392,543 + Shew_0344 0.59 +0.0 392,713 - Shew_0344 0.70 +0.6 392,747 - Shew_0344 0.72 +0.1 392,957 - Shew_0344 0.86 -0.0 393,073 + -0.4 393,453 - Shew_0345 0.24 +0.1 393,486 + Shew_0345 0.29 +1.3 393,789 + Shew_0345 0.77 +0.4 393,896 - +0.1 394,129 - Shew_0346 0.44 +0.1 394,217 - Shew_0346 0.64 -0.0 394,224 + Shew_0346 0.66 -0.1 394,224 + Shew_0346 0.66 -0.0 394,224 + Shew_0346 0.66 +0.2 394,232 - Shew_0346 0.67 +0.1 394,618 + Shew_0347 0.12 -0.1
Or see this region's nucleotide sequence