Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0283 and Shew_0284 are separated by 329 nucleotides Shew_0284 and Shew_0285 are separated by 28 nucleotides
Shew_0283: Shew_0283 - Mg chelatase, subunit ChlI (RefSeq), at 300,316 to 301,836
_0283
Shew_0284: Shew_0284 - hypothetical protein (RefSeq), at 302,166 to 303,491
_0284
Shew_0285: Shew_0285 - diguanylate cyclase (RefSeq), at 303,520 to 304,401
_0285
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 301.279 kb on - strand, within Shew_0283 at 301.347 kb on - strand, within Shew_0283 at 301.484 kb on + strand, within Shew_0283 at 301.683 kb on - strand, within Shew_0283 at 301.718 kb on + strand at 301.737 kb on + strand at 302.071 kb on + strand at 302.139 kb on - strand at 302.139 kb on - strand at 302.468 kb on + strand, within Shew_0284 at 302.481 kb on - strand, within Shew_0284 at 302.481 kb on - strand, within Shew_0284 at 302.621 kb on + strand, within Shew_0284 at 302.650 kb on - strand, within Shew_0284 at 302.698 kb on + strand, within Shew_0284 at 302.859 kb on - strand, within Shew_0284 at 303.036 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.257 kb on - strand, within Shew_0284 at 303.279 kb on + strand, within Shew_0284 at 303.388 kb on + strand at 303.542 kb on - strand at 303.561 kb on + strand at 303.584 kb on - strand at 303.584 kb on + strand at 303.784 kb on - strand, within Shew_0285 at 304.174 kb on + strand, within Shew_0285
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 301,279 - Shew_0283 0.63 -0.2 301,347 - Shew_0283 0.68 +0.7 301,484 + Shew_0283 0.77 -0.1 301,683 - Shew_0283 0.90 -0.0 301,718 + +0.9 301,737 + -0.1 302,071 + +2.9 302,139 - -1.7 302,139 - -0.8 302,468 + Shew_0284 0.23 -1.2 302,481 - Shew_0284 0.24 -0.8 302,481 - Shew_0284 0.24 -0.4 302,621 + Shew_0284 0.34 -0.7 302,650 - Shew_0284 0.37 -0.9 302,698 + Shew_0284 0.40 -2.1 302,859 - Shew_0284 0.52 -0.1 303,036 + Shew_0284 0.66 -0.8 303,046 + Shew_0284 0.66 -0.9 303,046 + Shew_0284 0.66 -1.1 303,046 + Shew_0284 0.66 -0.8 303,257 - Shew_0284 0.82 -0.8 303,279 + Shew_0284 0.84 -0.8 303,388 + -1.1 303,542 - -0.2 303,561 + -0.0 303,584 - -0.4 303,584 + -0.1 303,784 - Shew_0285 0.30 -0.3 304,174 + Shew_0285 0.74 -0.3
Or see this region's nucleotide sequence