Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3722 and Dshi_3723 are separated by 26 nucleotides Dshi_3723 and Dshi_3724 are separated by 41 nucleotides
Dshi_3722: Dshi_3722 - AMP-dependent synthetase and ligase (RefSeq), at 128,919 to 130,454
_3722
Dshi_3723: Dshi_3723 - Enoyl-CoA hydratase/isomerase (RefSeq), at 130,481 to 131,284
_3723
Dshi_3724: Dshi_3724 - Extracellular ligand-binding receptor (RefSeq), at 131,326 to 132,480
_3724
Position (kb)
130
131
132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 129.486 kb on - strand, within Dshi_3722 at 129.535 kb on + strand, within Dshi_3722 at 129.565 kb on - strand, within Dshi_3722 at 129.583 kb on + strand, within Dshi_3722 at 129.616 kb on + strand, within Dshi_3722 at 129.631 kb on + strand, within Dshi_3722 at 129.657 kb on - strand, within Dshi_3722 at 129.673 kb on + strand, within Dshi_3722 at 129.673 kb on + strand, within Dshi_3722 at 129.677 kb on + strand, within Dshi_3722 at 129.681 kb on - strand, within Dshi_3722 at 129.681 kb on - strand, within Dshi_3722 at 129.690 kb on + strand, within Dshi_3722 at 129.698 kb on - strand, within Dshi_3722 at 129.729 kb on + strand, within Dshi_3722 at 129.737 kb on - strand, within Dshi_3722 at 129.767 kb on + strand, within Dshi_3722 at 129.776 kb on + strand, within Dshi_3722 at 129.780 kb on - strand, within Dshi_3722 at 129.830 kb on + strand, within Dshi_3722 at 129.831 kb on + strand, within Dshi_3722 at 129.839 kb on - strand, within Dshi_3722 at 129.915 kb on + strand, within Dshi_3722 at 129.915 kb on + strand, within Dshi_3722 at 129.919 kb on + strand, within Dshi_3722 at 129.966 kb on + strand, within Dshi_3722 at 130.008 kb on - strand, within Dshi_3722 at 130.016 kb on - strand, within Dshi_3722 at 130.021 kb on + strand, within Dshi_3722 at 130.089 kb on + strand, within Dshi_3722 at 130.111 kb on - strand, within Dshi_3722 at 130.130 kb on + strand, within Dshi_3722 at 130.197 kb on + strand, within Dshi_3722 at 130.213 kb on + strand, within Dshi_3722 at 130.220 kb on - strand, within Dshi_3722 at 130.221 kb on - strand, within Dshi_3722 at 130.223 kb on + strand, within Dshi_3722 at 130.235 kb on - strand, within Dshi_3722 at 130.235 kb on - strand, within Dshi_3722 at 130.275 kb on + strand, within Dshi_3722 at 130.276 kb on - strand, within Dshi_3722 at 130.283 kb on + strand, within Dshi_3722 at 130.285 kb on + strand, within Dshi_3722 at 130.285 kb on + strand, within Dshi_3722 at 130.293 kb on - strand, within Dshi_3722 at 130.293 kb on - strand, within Dshi_3722 at 130.365 kb on - strand at 130.423 kb on + strand at 130.425 kb on + strand at 130.425 kb on + strand at 130.437 kb on - strand at 130.437 kb on - strand at 130.439 kb on - strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.457 kb on - strand at 130.457 kb on - strand at 130.457 kb on - strand at 130.460 kb on + strand at 130.460 kb on + strand at 130.460 kb on + strand at 130.460 kb on + strand at 130.468 kb on - strand at 130.471 kb on - strand at 130.489 kb on + strand at 130.521 kb on - strand at 130.606 kb on + strand, within Dshi_3723 at 131.047 kb on + strand, within Dshi_3723 at 131.316 kb on - strand at 131.316 kb on - strand at 131.339 kb on - strand at 131.358 kb on - strand at 131.367 kb on - strand at 131.371 kb on + strand at 131.371 kb on + strand at 131.376 kb on + strand at 131.379 kb on - strand at 131.420 kb on + strand at 131.512 kb on + strand, within Dshi_3724 at 131.563 kb on + strand, within Dshi_3724 at 131.678 kb on - strand, within Dshi_3724 at 131.690 kb on - strand, within Dshi_3724 at 131.722 kb on + strand, within Dshi_3724 at 131.806 kb on + strand, within Dshi_3724 at 131.813 kb on + strand, within Dshi_3724 at 131.824 kb on + strand, within Dshi_3724 at 131.830 kb on + strand, within Dshi_3724 at 131.857 kb on + strand, within Dshi_3724 at 131.867 kb on + strand, within Dshi_3724 at 131.872 kb on + strand, within Dshi_3724 at 131.882 kb on + strand, within Dshi_3724 at 131.885 kb on - strand, within Dshi_3724 at 131.963 kb on + strand, within Dshi_3724 at 131.981 kb on - strand, within Dshi_3724 at 131.981 kb on - strand, within Dshi_3724 at 131.992 kb on + strand, within Dshi_3724 at 132.000 kb on - strand, within Dshi_3724 at 132.000 kb on - strand, within Dshi_3724 at 132.010 kb on - strand, within Dshi_3724 at 132.047 kb on + strand, within Dshi_3724 at 132.128 kb on - strand, within Dshi_3724 at 132.140 kb on + strand, within Dshi_3724 at 132.148 kb on - strand, within Dshi_3724 at 132.209 kb on + strand, within Dshi_3724 at 132.216 kb on + strand, within Dshi_3724 at 132.241 kb on - strand, within Dshi_3724 at 132.241 kb on - strand, within Dshi_3724 at 132.276 kb on + strand, within Dshi_3724
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 129,486 - Dshi_3722 0.37 +1.2 129,535 + Dshi_3722 0.40 +0.6 129,565 - Dshi_3722 0.42 +1.8 129,583 + Dshi_3722 0.43 -0.4 129,616 + Dshi_3722 0.45 +0.4 129,631 + Dshi_3722 0.46 +0.3 129,657 - Dshi_3722 0.48 +0.8 129,673 + Dshi_3722 0.49 +1.0 129,673 + Dshi_3722 0.49 -0.1 129,677 + Dshi_3722 0.49 +0.4 129,681 - Dshi_3722 0.50 +2.1 129,681 - Dshi_3722 0.50 +0.1 129,690 + Dshi_3722 0.50 +1.4 129,698 - Dshi_3722 0.51 +0.3 129,729 + Dshi_3722 0.53 +0.5 129,737 - Dshi_3722 0.53 +1.3 129,767 + Dshi_3722 0.55 +0.3 129,776 + Dshi_3722 0.56 +0.8 129,780 - Dshi_3722 0.56 +1.1 129,830 + Dshi_3722 0.59 +0.0 129,831 + Dshi_3722 0.59 +1.1 129,839 - Dshi_3722 0.60 +1.1 129,915 + Dshi_3722 0.65 +0.4 129,915 + Dshi_3722 0.65 +0.7 129,919 + Dshi_3722 0.65 -0.2 129,966 + Dshi_3722 0.68 -0.3 130,008 - Dshi_3722 0.71 +1.3 130,016 - Dshi_3722 0.71 +1.0 130,021 + Dshi_3722 0.72 +1.0 130,089 + Dshi_3722 0.76 -0.2 130,111 - Dshi_3722 0.78 +0.3 130,130 + Dshi_3722 0.79 +0.8 130,197 + Dshi_3722 0.83 +0.7 130,213 + Dshi_3722 0.84 +0.9 130,220 - Dshi_3722 0.85 +0.3 130,221 - Dshi_3722 0.85 +0.7 130,223 + Dshi_3722 0.85 +1.0 130,235 - Dshi_3722 0.86 +1.7 130,235 - Dshi_3722 0.86 -0.1 130,275 + Dshi_3722 0.88 +1.9 130,276 - Dshi_3722 0.88 +0.1 130,283 + Dshi_3722 0.89 -0.2 130,285 + Dshi_3722 0.89 +0.2 130,285 + Dshi_3722 0.89 +1.1 130,293 - Dshi_3722 0.89 +0.5 130,293 - Dshi_3722 0.89 +0.1 130,365 - +0.6 130,423 + +0.1 130,425 + +0.4 130,425 + +0.8 130,437 - -0.2 130,437 - +0.1 130,439 - +0.6 130,449 + +1.1 130,449 + -0.3 130,457 - -0.9 130,457 - +0.1 130,457 - +0.1 130,460 + +0.5 130,460 + -0.0 130,460 + -0.2 130,460 + -0.2 130,468 - -0.5 130,471 - -0.3 130,489 + -0.7 130,521 - +0.8 130,606 + Dshi_3723 0.16 +0.6 131,047 + Dshi_3723 0.70 +0.3 131,316 - +0.3 131,316 - +0.1 131,339 - -1.9 131,358 - -0.2 131,367 - +0.2 131,371 + +0.4 131,371 + -0.3 131,376 + +0.0 131,379 - +0.1 131,420 + +0.2 131,512 + Dshi_3724 0.16 -0.8 131,563 + Dshi_3724 0.21 +0.0 131,678 - Dshi_3724 0.30 +0.2 131,690 - Dshi_3724 0.32 +2.4 131,722 + Dshi_3724 0.34 -0.2 131,806 + Dshi_3724 0.42 +0.1 131,813 + Dshi_3724 0.42 +0.5 131,824 + Dshi_3724 0.43 +0.2 131,830 + Dshi_3724 0.44 -1.2 131,857 + Dshi_3724 0.46 -0.2 131,867 + Dshi_3724 0.47 -0.1 131,872 + Dshi_3724 0.47 -0.1 131,882 + Dshi_3724 0.48 +0.2 131,885 - Dshi_3724 0.48 +0.9 131,963 + Dshi_3724 0.55 +0.1 131,981 - Dshi_3724 0.57 -0.5 131,981 - Dshi_3724 0.57 -0.5 131,992 + Dshi_3724 0.58 -0.1 132,000 - Dshi_3724 0.58 -1.0 132,000 - Dshi_3724 0.58 -1.8 132,010 - Dshi_3724 0.59 -0.4 132,047 + Dshi_3724 0.62 +0.0 132,128 - Dshi_3724 0.69 -0.0 132,140 + Dshi_3724 0.70 +0.2 132,148 - Dshi_3724 0.71 +0.5 132,209 + Dshi_3724 0.76 +0.1 132,216 + Dshi_3724 0.77 -0.2 132,241 - Dshi_3724 0.79 -0.1 132,241 - Dshi_3724 0.79 -0.0 132,276 + Dshi_3724 0.82 -0.7
Or see this region's nucleotide sequence