Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3633 and Dshi_3634 are separated by 149 nucleotides Dshi_3634 and Dshi_3635 are separated by 169 nucleotides Dshi_3635 and Dshi_3636 are separated by 124 nucleotides Dshi_3636 and Dshi_3637 are separated by 168 nucleotides Dshi_3637 and Dshi_3638 are separated by 43 nucleotides
Dshi_3633: Dshi_3633 - hypothetical protein (RefSeq), at 35,746 to 37,389
_3633
Dshi_3634: Dshi_3634 - hypothetical protein (RefSeq), at 37,539 to 37,766
_3634
Dshi_3635: Dshi_3635 - transcriptional regulator, XRE family (RefSeq), at 37,936 to 38,193
_3635
Dshi_3636: Dshi_3636 - hypothetical protein (RefSeq), at 38,318 to 38,611
_3636
Dshi_3637: Dshi_3637 - hypothetical protein (RefSeq), at 38,780 to 39,133
_3637
Dshi_3638: Dshi_3638 - Lytic transglycosylase catalytic (RefSeq), at 39,177 to 39,797
_3638
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.936 kb on - strand, within Dshi_3633 at 36.949 kb on + strand, within Dshi_3633 at 36.955 kb on + strand, within Dshi_3633 at 36.958 kb on - strand, within Dshi_3633 at 36.968 kb on + strand, within Dshi_3633 at 36.974 kb on - strand, within Dshi_3633 at 37.010 kb on + strand, within Dshi_3633 at 37.018 kb on - strand, within Dshi_3633 at 37.018 kb on - strand, within Dshi_3633 at 37.051 kb on + strand, within Dshi_3633 at 37.052 kb on + strand, within Dshi_3633 at 37.061 kb on - strand, within Dshi_3633 at 37.064 kb on - strand, within Dshi_3633 at 37.107 kb on + strand, within Dshi_3633 at 37.115 kb on - strand, within Dshi_3633 at 37.117 kb on + strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.139 kb on - strand, within Dshi_3633 at 37.140 kb on + strand, within Dshi_3633 at 37.150 kb on + strand, within Dshi_3633 at 37.151 kb on + strand, within Dshi_3633 at 37.159 kb on - strand, within Dshi_3633 at 37.167 kb on + strand, within Dshi_3633 at 37.208 kb on + strand, within Dshi_3633 at 37.209 kb on - strand, within Dshi_3633 at 37.216 kb on - strand, within Dshi_3633 at 37.244 kb on + strand at 37.252 kb on - strand at 37.252 kb on - strand at 37.335 kb on + strand at 37.343 kb on - strand at 37.348 kb on + strand at 37.384 kb on + strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.446 kb on + strand at 37.469 kb on + strand at 37.469 kb on + strand at 37.479 kb on + strand at 37.482 kb on - strand at 37.482 kb on - strand at 37.494 kb on + strand at 37.506 kb on - strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.507 kb on - strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.530 kb on - strand at 37.537 kb on - strand at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.610 kb on + strand, within Dshi_3634 at 37.634 kb on + strand, within Dshi_3634 at 37.642 kb on - strand, within Dshi_3634 at 37.647 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.672 kb on + strand, within Dshi_3634 at 37.675 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.683 kb on + strand, within Dshi_3634 at 37.702 kb on + strand, within Dshi_3634 at 37.703 kb on + strand, within Dshi_3634 at 37.715 kb on - strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.720 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.744 kb on + strand at 37.750 kb on + strand at 37.750 kb on + strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.758 kb on - strand at 37.777 kb on + strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.794 kb on - strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.821 kb on - strand at 37.821 kb on - strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.829 kb on - strand at 37.829 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.879 kb on + strand at 37.885 kb on + strand at 37.907 kb on + strand at 37.972 kb on - strand, within Dshi_3635 at 37.972 kb on - strand, within Dshi_3635 at 37.982 kb on + strand, within Dshi_3635 at 37.990 kb on - strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.019 kb on - strand, within Dshi_3635 at 38.092 kb on - strand, within Dshi_3635 at 38.093 kb on - strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.113 kb on + strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.118 kb on + strand, within Dshi_3635 at 38.145 kb on + strand, within Dshi_3635 at 38.148 kb on - strand, within Dshi_3635 at 38.153 kb on - strand, within Dshi_3635 at 38.167 kb on - strand, within Dshi_3635 at 38.277 kb on + strand at 38.286 kb on + strand at 38.288 kb on + strand at 38.294 kb on + strand at 38.294 kb on + strand at 38.296 kb on - strand at 38.298 kb on + strand at 38.302 kb on - strand at 38.302 kb on - strand at 38.345 kb on + strand at 38.358 kb on - strand, within Dshi_3636 at 38.362 kb on + strand, within Dshi_3636 at 38.364 kb on + strand, within Dshi_3636 at 38.371 kb on + strand, within Dshi_3636 at 38.380 kb on + strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.417 kb on + strand, within Dshi_3636 at 38.430 kb on - strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.440 kb on + strand, within Dshi_3636 at 38.456 kb on + strand, within Dshi_3636 at 38.472 kb on - strand, within Dshi_3636 at 38.474 kb on - strand, within Dshi_3636 at 38.520 kb on + strand, within Dshi_3636 at 38.537 kb on + strand, within Dshi_3636 at 38.541 kb on + strand, within Dshi_3636 at 38.570 kb on + strand, within Dshi_3636 at 38.572 kb on - strand, within Dshi_3636 at 38.588 kb on - strand at 38.590 kb on - strand at 38.590 kb on - strand at 38.613 kb on + strand at 38.615 kb on + strand at 38.623 kb on - strand at 38.636 kb on + strand at 38.644 kb on - strand at 38.651 kb on + strand at 38.651 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand at 38.783 kb on - strand at 38.785 kb on - strand at 38.913 kb on + strand, within Dshi_3637 at 39.011 kb on + strand, within Dshi_3637 at 39.028 kb on + strand, within Dshi_3637 at 39.042 kb on + strand, within Dshi_3637 at 39.047 kb on + strand, within Dshi_3637 at 39.069 kb on + strand, within Dshi_3637 at 39.077 kb on - strand, within Dshi_3637 at 39.116 kb on - strand at 39.188 kb on - strand at 39.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 36,936 - Dshi_3633 0.72 +0.4 36,949 + Dshi_3633 0.73 -0.4 36,955 + Dshi_3633 0.74 +1.0 36,958 - Dshi_3633 0.74 +0.6 36,968 + Dshi_3633 0.74 -0.2 36,974 - Dshi_3633 0.75 -0.0 37,010 + Dshi_3633 0.77 -0.2 37,018 - Dshi_3633 0.77 -0.3 37,018 - Dshi_3633 0.77 +0.9 37,051 + Dshi_3633 0.79 +0.1 37,052 + Dshi_3633 0.79 +1.4 37,061 - Dshi_3633 0.80 +1.1 37,064 - Dshi_3633 0.80 +0.7 37,107 + Dshi_3633 0.83 +0.6 37,115 - Dshi_3633 0.83 -0.9 37,117 + Dshi_3633 0.83 +0.7 37,125 - Dshi_3633 0.84 -0.2 37,125 - Dshi_3633 0.84 -0.1 37,125 - Dshi_3633 0.84 +0.2 37,139 - Dshi_3633 0.85 +0.1 37,140 + Dshi_3633 0.85 +0.2 37,150 + Dshi_3633 0.85 -0.4 37,151 + Dshi_3633 0.85 +1.1 37,159 - Dshi_3633 0.86 -0.0 37,167 + Dshi_3633 0.86 +0.7 37,208 + Dshi_3633 0.89 +0.1 37,209 - Dshi_3633 0.89 -0.6 37,216 - Dshi_3633 0.89 -1.8 37,244 + +0.1 37,252 - +0.6 37,252 - -1.2 37,335 + -0.6 37,343 - +0.0 37,348 + -0.2 37,384 + +0.1 37,392 - -0.1 37,392 - -0.8 37,392 - -0.2 37,446 + +0.8 37,469 + +1.7 37,469 + +0.0 37,479 + +0.3 37,482 - +0.0 37,482 - -0.2 37,494 + +0.5 37,506 - -1.1 37,507 + +1.0 37,507 + -1.8 37,507 - -0.2 37,512 + +0.6 37,512 + +0.8 37,512 + +0.1 37,512 - -0.2 37,520 - -0.6 37,520 - +0.4 37,520 - +0.4 37,520 - -0.5 37,520 - +0.2 37,520 - -0.6 37,520 - -0.3 37,530 - -0.1 37,537 - -1.0 37,605 + Dshi_3634 0.29 -0.1 37,605 + Dshi_3634 0.29 +0.3 37,605 + Dshi_3634 0.29 +0.2 37,610 + Dshi_3634 0.31 +0.2 37,634 + Dshi_3634 0.42 +1.0 37,642 - Dshi_3634 0.45 +1.4 37,647 - Dshi_3634 0.47 -0.2 37,659 - Dshi_3634 0.53 -0.0 37,659 - Dshi_3634 0.53 +0.0 37,672 + Dshi_3634 0.58 -0.6 37,675 - Dshi_3634 0.60 -1.1 37,680 - Dshi_3634 0.62 -0.3 37,680 - Dshi_3634 0.62 +0.0 37,683 + Dshi_3634 0.63 +1.2 37,702 + Dshi_3634 0.71 -0.7 37,703 + Dshi_3634 0.72 +0.1 37,715 - Dshi_3634 0.77 -1.2 37,717 + Dshi_3634 0.78 +0.0 37,717 + Dshi_3634 0.78 +0.5 37,720 - Dshi_3634 0.79 +0.0 37,725 - Dshi_3634 0.82 +1.4 37,725 - Dshi_3634 0.82 +1.1 37,725 - Dshi_3634 0.82 +0.8 37,743 + Dshi_3634 0.89 -0.7 37,743 + Dshi_3634 0.89 -0.9 37,744 + +1.1 37,750 + -0.2 37,750 + -2.5 37,752 - +0.9 37,752 - +0.1 37,752 - -0.6 37,758 - -0.1 37,777 + -0.5 37,786 - -0.4 37,786 - +1.3 37,786 - -0.8 37,794 - -0.3 37,811 + -0.1 37,811 + +0.5 37,811 + -1.6 37,819 - -0.1 37,819 - -1.2 37,819 - +0.6 37,821 - +0.1 37,821 - +0.5 37,826 + +1.1 37,826 + +0.3 37,826 + +0.1 37,829 - +0.4 37,829 - +0.4 37,834 - +1.7 37,834 - +0.1 37,834 - +0.8 37,879 + +0.0 37,885 + +0.5 37,907 + -0.9 37,972 - Dshi_3635 0.14 +0.1 37,972 - Dshi_3635 0.14 +1.1 37,982 + Dshi_3635 0.18 +0.9 37,990 - Dshi_3635 0.21 +2.1 37,992 + Dshi_3635 0.22 +0.4 37,992 + Dshi_3635 0.22 +1.0 37,992 + Dshi_3635 0.22 +1.1 37,992 + Dshi_3635 0.22 -0.3 37,992 + Dshi_3635 0.22 +0.4 37,992 + Dshi_3635 0.22 +0.2 37,992 + Dshi_3635 0.22 +0.5 37,992 + Dshi_3635 0.22 +0.4 37,992 + Dshi_3635 0.22 +0.5 37,992 + Dshi_3635 0.22 +0.7 38,000 - Dshi_3635 0.25 -1.8 38,000 - Dshi_3635 0.25 +0.4 38,000 - Dshi_3635 0.25 -0.4 38,000 - Dshi_3635 0.25 -0.2 38,000 - Dshi_3635 0.25 +1.7 38,000 - Dshi_3635 0.25 +1.0 38,000 - Dshi_3635 0.25 +0.3 38,019 - Dshi_3635 0.32 -0.2 38,092 - Dshi_3635 0.60 +0.3 38,093 - Dshi_3635 0.61 +0.1 38,107 + Dshi_3635 0.66 -1.1 38,107 + Dshi_3635 0.66 +1.5 38,113 + Dshi_3635 0.69 -0.1 38,115 - Dshi_3635 0.69 +0.0 38,115 - Dshi_3635 0.69 -0.1 38,118 + Dshi_3635 0.71 +0.8 38,145 + Dshi_3635 0.81 +0.6 38,148 - Dshi_3635 0.82 -0.3 38,153 - Dshi_3635 0.84 +0.1 38,167 - Dshi_3635 0.90 -1.2 38,277 + +0.1 38,286 + -0.1 38,288 + -0.8 38,294 + -1.0 38,294 + +0.1 38,296 - -0.2 38,298 + +0.8 38,302 - +0.3 38,302 - -0.3 38,345 + +0.4 38,358 - Dshi_3636 0.14 +0.1 38,362 + Dshi_3636 0.15 +1.4 38,364 + Dshi_3636 0.16 +0.3 38,371 + Dshi_3636 0.18 +0.6 38,380 + Dshi_3636 0.21 -0.0 38,406 - Dshi_3636 0.30 -0.3 38,406 - Dshi_3636 0.30 -1.2 38,406 - Dshi_3636 0.30 -1.2 38,417 + Dshi_3636 0.34 +1.8 38,430 - Dshi_3636 0.38 -0.1 38,432 + Dshi_3636 0.39 +0.9 38,432 + Dshi_3636 0.39 +0.7 38,432 + Dshi_3636 0.39 -0.2 38,432 + Dshi_3636 0.39 -0.1 38,432 + Dshi_3636 0.39 +0.6 38,440 + Dshi_3636 0.41 -0.2 38,456 + Dshi_3636 0.47 +0.1 38,472 - Dshi_3636 0.52 -0.2 38,474 - Dshi_3636 0.53 +0.8 38,520 + Dshi_3636 0.69 +1.1 38,537 + Dshi_3636 0.74 +0.4 38,541 + Dshi_3636 0.76 +0.2 38,570 + Dshi_3636 0.86 -0.5 38,572 - Dshi_3636 0.86 -1.2 38,588 - +0.4 38,590 - +1.8 38,590 - -0.7 38,613 + -0.2 38,615 + -0.5 38,623 - +0.8 38,636 + -0.4 38,644 - +0.5 38,651 + -0.9 38,651 + -2.1 38,741 + +0.0 38,741 + -1.2 38,741 + +1.3 38,783 - +0.7 38,785 - +0.7 38,913 + Dshi_3637 0.38 +1.2 39,011 + Dshi_3637 0.65 +2.1 39,028 + Dshi_3637 0.70 +2.7 39,042 + Dshi_3637 0.74 +1.3 39,047 + Dshi_3637 0.75 +0.1 39,069 + Dshi_3637 0.82 +0.8 39,077 - Dshi_3637 0.84 +0.7 39,116 - -0.0 39,188 - -0.3 39,188 - +0.5
Or see this region's nucleotide sequence