Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3067 and Dshi_3068 are separated by 302 nucleotides Dshi_3068 and Dshi_3069 are separated by 59 nucleotides Dshi_3069 and Dshi_3070 are separated by 95 nucleotides
Dshi_3067: Dshi_3067 - acetoacetyl-CoA reductase (RefSeq), at 3,235,779 to 3,236,501
_3067
Dshi_3068: Dshi_3068 - transcriptional regulator, LysR family (RefSeq), at 3,236,804 to 3,237,751
_3068
Dshi_3069: Dshi_3069 - protein of unknown function DUF465 (RefSeq), at 3,237,811 to 3,237,978
_3069
Dshi_3070: Dshi_3070 - methyltransferase small (RefSeq), at 3,238,074 to 3,238,844
_3070
Position (kb)
3236
3237
3238 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3235.855 kb on + strand, within Dshi_3067 at 3235.863 kb on - strand, within Dshi_3067 at 3235.930 kb on - strand, within Dshi_3067 at 3236.036 kb on - strand, within Dshi_3067 at 3236.065 kb on - strand, within Dshi_3067 at 3236.134 kb on - strand, within Dshi_3067 at 3236.238 kb on + strand, within Dshi_3067 at 3236.526 kb on - strand at 3236.645 kb on + strand at 3237.023 kb on + strand, within Dshi_3068 at 3237.132 kb on + strand, within Dshi_3068 at 3237.140 kb on - strand, within Dshi_3068 at 3237.201 kb on - strand, within Dshi_3068 at 3237.532 kb on + strand, within Dshi_3068 at 3237.598 kb on - strand, within Dshi_3068 at 3237.661 kb on - strand at 3237.755 kb on - strand at 3237.785 kb on - strand at 3237.827 kb on + strand at 3237.901 kb on + strand, within Dshi_3069 at 3237.939 kb on + strand, within Dshi_3069 at 3238.014 kb on + strand at 3238.409 kb on + strand, within Dshi_3070 at 3238.435 kb on - strand, within Dshi_3070 at 3238.454 kb on + strand, within Dshi_3070 at 3238.459 kb on + strand, within Dshi_3070 at 3238.494 kb on - strand, within Dshi_3070 at 3238.655 kb on + strand, within Dshi_3070 at 3238.655 kb on + strand, within Dshi_3070 at 3238.748 kb on + strand, within Dshi_3070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 3,235,855 + Dshi_3067 0.11 +2.8 3,235,863 - Dshi_3067 0.12 +1.4 3,235,930 - Dshi_3067 0.21 +1.5 3,236,036 - Dshi_3067 0.36 +1.1 3,236,065 - Dshi_3067 0.40 +1.3 3,236,134 - Dshi_3067 0.49 +0.5 3,236,238 + Dshi_3067 0.63 +1.2 3,236,526 - +0.1 3,236,645 + +0.6 3,237,023 + Dshi_3068 0.23 -0.6 3,237,132 + Dshi_3068 0.35 -0.2 3,237,140 - Dshi_3068 0.35 +0.2 3,237,201 - Dshi_3068 0.42 +0.5 3,237,532 + Dshi_3068 0.77 +1.4 3,237,598 - Dshi_3068 0.84 -0.2 3,237,661 - +0.8 3,237,755 - -0.5 3,237,785 - +1.1 3,237,827 + +0.8 3,237,901 + Dshi_3069 0.54 +1.2 3,237,939 + Dshi_3069 0.76 -0.2 3,238,014 + +0.1 3,238,409 + Dshi_3070 0.43 -0.8 3,238,435 - Dshi_3070 0.47 +0.4 3,238,454 + Dshi_3070 0.49 +1.0 3,238,459 + Dshi_3070 0.50 +0.4 3,238,494 - Dshi_3070 0.54 -1.9 3,238,655 + Dshi_3070 0.75 -0.9 3,238,655 + Dshi_3070 0.75 +0.4 3,238,748 + Dshi_3070 0.87 +0.1
Or see this region's nucleotide sequence