Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3067

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3066 and Dshi_3067 are separated by 100 nucleotidesDshi_3067 and Dshi_3068 are separated by 302 nucleotides Dshi_3066: Dshi_3066 - acetyl-CoA acetyltransferase (RefSeq), at 3,234,503 to 3,235,678 _3066 Dshi_3067: Dshi_3067 - acetoacetyl-CoA reductase (RefSeq), at 3,235,779 to 3,236,501 _3067 Dshi_3068: Dshi_3068 - transcriptional regulator, LysR family (RefSeq), at 3,236,804 to 3,237,751 _3068 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -1 0 1 2 3at 3234.869 kb on + strand, within Dshi_3066at 3234.877 kb on - strand, within Dshi_3066at 3234.890 kb on + strand, within Dshi_3066at 3234.966 kb on + strand, within Dshi_3066at 3234.979 kb on - strand, within Dshi_3066at 3235.156 kb on - strand, within Dshi_3066at 3235.407 kb on - strand, within Dshi_3066at 3235.460 kb on + strand, within Dshi_3066at 3235.460 kb on + strand, within Dshi_3066at 3235.473 kb on - strand, within Dshi_3066at 3235.489 kb on + strand, within Dshi_3066at 3235.855 kb on + strand, within Dshi_3067at 3235.863 kb on - strand, within Dshi_3067at 3235.930 kb on - strand, within Dshi_3067at 3236.036 kb on - strand, within Dshi_3067at 3236.065 kb on - strand, within Dshi_3067at 3236.134 kb on - strand, within Dshi_3067at 3236.238 kb on + strand, within Dshi_3067at 3236.526 kb on - strandat 3236.645 kb on + strandat 3237.023 kb on + strand, within Dshi_3068at 3237.132 kb on + strand, within Dshi_3068at 3237.140 kb on - strand, within Dshi_3068at 3237.201 kb on - strand, within Dshi_3068

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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3,234,869 + Dshi_3066 0.31 -0.2
3,234,877 - Dshi_3066 0.32 +2.3
3,234,890 + Dshi_3066 0.33 +0.9
3,234,966 + Dshi_3066 0.39 +2.3
3,234,979 - Dshi_3066 0.40 +0.6
3,235,156 - Dshi_3066 0.56 +1.0
3,235,407 - Dshi_3066 0.77 +0.2
3,235,460 + Dshi_3066 0.81 -0.2
3,235,460 + Dshi_3066 0.81 +1.7
3,235,473 - Dshi_3066 0.82 +1.0
3,235,489 + Dshi_3066 0.84 +2.2
3,235,855 + Dshi_3067 0.11 +2.8
3,235,863 - Dshi_3067 0.12 +1.4
3,235,930 - Dshi_3067 0.21 +1.5
3,236,036 - Dshi_3067 0.36 +1.1
3,236,065 - Dshi_3067 0.40 +1.3
3,236,134 - Dshi_3067 0.49 +0.5
3,236,238 + Dshi_3067 0.63 +1.2
3,236,526 - +0.1
3,236,645 + +0.6
3,237,023 + Dshi_3068 0.23 -0.6
3,237,132 + Dshi_3068 0.35 -0.2
3,237,140 - Dshi_3068 0.35 +0.2
3,237,201 - Dshi_3068 0.42 +0.5

Or see this region's nucleotide sequence