Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3032
Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,199,310 | + | +0.2 | |||
3,199,318 | - | -0.6 | |||
3,199,318 | - | +1.2 | |||
3,199,318 | - | +1.3 | |||
3,199,399 | - | +0.6 | |||
3,199,448 | + | +0.6 | |||
3,199,506 | - | -0.2 | |||
3,199,684 | - | Dshi_3032 | 0.15 | +0.3 | |
3,199,736 | - | Dshi_3032 | 0.18 | -0.7 | |
3,199,821 | - | Dshi_3032 | 0.23 | -0.3 | |
3,200,430 | + | Dshi_3032 | 0.58 | -1.2 | |
3,201,107 | + | +0.0 | |||
3,201,184 | - | +0.2 | |||
3,201,196 | - | +0.2 | |||
3,201,290 | + | -0.4 | |||
3,201,401 | + | Dshi_3033 | 0.14 | -0.2 | |
3,201,443 | - | Dshi_3033 | 0.17 | -0.2 | |
3,201,655 | + | Dshi_3033 | 0.33 | +0.4 | |
3,201,655 | + | Dshi_3033 | 0.33 | -0.5 | |
3,201,693 | - | Dshi_3033 | 0.36 | +2.4 | |
3,201,782 | + | Dshi_3033 | 0.42 | -0.1 | |
3,201,782 | + | Dshi_3033 | 0.42 | -0.5 | |
3,201,816 | - | Dshi_3033 | 0.45 | -1.0 | |
3,201,844 | - | Dshi_3033 | 0.47 | -0.1 | |
3,202,085 | - | Dshi_3033 | 0.65 | +0.8 |
Or see this region's nucleotide sequence