Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2785 and Dshi_2786 are separated by 4 nucleotides Dshi_2786 and Dshi_2787 are separated by 36 nucleotides Dshi_2787 and Dshi_2788 are separated by 53 nucleotides Dshi_2788 and Dshi_2789 are separated by 165 nucleotides
Dshi_2785: Dshi_2785 - glutamyl-tRNA(Gln) amidotransferase, A subunit (RefSeq), at 2,944,803 to 2,946,290
_2785
Dshi_2786: Dshi_2786 - glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq), at 2,946,295 to 2,946,582
_2786
Dshi_2787: Dshi_2787 - hypothetical protein (RefSeq), at 2,946,619 to 2,947,284
_2787
Dshi_2788: Dshi_2788 - beta-lactamase domain protein (RefSeq), at 2,947,338 to 2,948,030
_2788
Dshi_2789: Dshi_2789 - CMP/dCMP deaminase zinc-binding (RefSeq), at 2,948,196 to 2,948,651
_2789
Position (kb)
2946
2947
2948 Strain fitness (log2 ratio)
-1
0
1
2 at 2946.637 kb on + strand at 2946.670 kb on - strand at 2946.684 kb on + strand at 2946.696 kb on + strand, within Dshi_2787 at 2946.798 kb on - strand, within Dshi_2787 at 2946.812 kb on + strand, within Dshi_2787 at 2946.812 kb on + strand, within Dshi_2787 at 2946.820 kb on - strand, within Dshi_2787 at 2946.874 kb on + strand, within Dshi_2787 at 2946.948 kb on - strand, within Dshi_2787 at 2946.960 kb on + strand, within Dshi_2787 at 2946.983 kb on + strand, within Dshi_2787 at 2947.010 kb on + strand, within Dshi_2787 at 2947.068 kb on + strand, within Dshi_2787 at 2947.075 kb on + strand, within Dshi_2787 at 2947.083 kb on - strand, within Dshi_2787 at 2947.201 kb on + strand, within Dshi_2787 at 2947.231 kb on - strand at 2947.243 kb on - strand at 2947.312 kb on - strand at 2947.351 kb on + strand at 2947.478 kb on - strand, within Dshi_2788 at 2947.494 kb on - strand, within Dshi_2788 at 2947.621 kb on - strand, within Dshi_2788 at 2947.702 kb on - strand, within Dshi_2788 at 2947.884 kb on + strand, within Dshi_2788 at 2947.926 kb on + strand, within Dshi_2788 at 2947.933 kb on + strand, within Dshi_2788 at 2947.946 kb on + strand, within Dshi_2788 at 2947.984 kb on + strand at 2947.997 kb on - strand at 2948.013 kb on - strand at 2948.017 kb on + strand at 2948.024 kb on + strand at 2948.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 2,946,637 + -0.1 2,946,670 - -0.4 2,946,684 + +0.2 2,946,696 + Dshi_2787 0.12 +1.0 2,946,798 - Dshi_2787 0.27 +0.2 2,946,812 + Dshi_2787 0.29 +0.2 2,946,812 + Dshi_2787 0.29 +1.3 2,946,820 - Dshi_2787 0.30 +0.0 2,946,874 + Dshi_2787 0.38 -0.2 2,946,948 - Dshi_2787 0.49 +1.0 2,946,960 + Dshi_2787 0.51 -0.1 2,946,983 + Dshi_2787 0.55 +1.1 2,947,010 + Dshi_2787 0.59 -0.1 2,947,068 + Dshi_2787 0.67 +0.6 2,947,075 + Dshi_2787 0.68 +0.2 2,947,083 - Dshi_2787 0.70 +1.0 2,947,201 + Dshi_2787 0.87 +0.6 2,947,231 - -0.4 2,947,243 - -0.1 2,947,312 - -0.4 2,947,351 + +0.5 2,947,478 - Dshi_2788 0.20 +0.6 2,947,494 - Dshi_2788 0.23 -0.0 2,947,621 - Dshi_2788 0.41 -1.0 2,947,702 - Dshi_2788 0.53 +0.9 2,947,884 + Dshi_2788 0.79 -1.1 2,947,926 + Dshi_2788 0.85 -0.2 2,947,933 + Dshi_2788 0.86 +1.8 2,947,946 + Dshi_2788 0.88 +0.6 2,947,984 + -0.1 2,947,997 - -0.2 2,948,013 - +0.5 2,948,017 + +0.3 2,948,024 + +0.2 2,948,060 + -0.7
Or see this region's nucleotide sequence