Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2676 and Dshi_2677 overlap by 4 nucleotides Dshi_2677 and Dshi_2678 are separated by 22 nucleotides Dshi_2678 and Dshi_2679 overlap by 4 nucleotides
Dshi_2676: Dshi_2676 - histidine kinase (RefSeq), at 2,832,817 to 2,834,847
_2676
Dshi_2677: Dshi_2677 - lipolytic protein G-D-S-L family (RefSeq), at 2,834,844 to 2,835,545
_2677
Dshi_2678: Dshi_2678 - ABC transporter related (RefSeq), at 2,835,568 to 2,836,272
_2678
Dshi_2679: Dshi_2679 - protein of unknown function DUF214 (RefSeq), at 2,836,269 to 2,838,797
_2679
Position (kb)
2834
2835
2836 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2833.896 kb on - strand, within Dshi_2676 at 2833.946 kb on + strand, within Dshi_2676 at 2834.083 kb on - strand, within Dshi_2676 at 2834.117 kb on - strand, within Dshi_2676 at 2834.130 kb on - strand, within Dshi_2676 at 2834.208 kb on - strand, within Dshi_2676 at 2834.407 kb on + strand, within Dshi_2676 at 2834.415 kb on - strand, within Dshi_2676 at 2834.420 kb on + strand, within Dshi_2676 at 2834.438 kb on - strand, within Dshi_2676 at 2834.651 kb on + strand at 2834.792 kb on + strand at 2834.802 kb on + strand at 2834.952 kb on + strand, within Dshi_2677 at 2834.952 kb on + strand, within Dshi_2677 at 2834.967 kb on - strand, within Dshi_2677 at 2834.978 kb on - strand, within Dshi_2677 at 2834.981 kb on - strand, within Dshi_2677 at 2835.009 kb on - strand, within Dshi_2677 at 2835.043 kb on - strand, within Dshi_2677 at 2835.162 kb on - strand, within Dshi_2677 at 2835.173 kb on - strand, within Dshi_2677 at 2835.178 kb on - strand, within Dshi_2677 at 2835.256 kb on - strand, within Dshi_2677 at 2835.295 kb on + strand, within Dshi_2677 at 2835.305 kb on + strand, within Dshi_2677 at 2835.330 kb on + strand, within Dshi_2677 at 2835.334 kb on - strand, within Dshi_2677 at 2835.350 kb on + strand, within Dshi_2677 at 2835.437 kb on + strand, within Dshi_2677 at 2835.484 kb on - strand at 2835.575 kb on + strand at 2835.615 kb on + strand at 2835.628 kb on - strand at 2835.677 kb on + strand, within Dshi_2678 at 2835.695 kb on - strand, within Dshi_2678 at 2835.765 kb on - strand, within Dshi_2678 at 2835.776 kb on + strand, within Dshi_2678 at 2835.781 kb on + strand, within Dshi_2678 at 2835.847 kb on - strand, within Dshi_2678 at 2835.851 kb on - strand, within Dshi_2678 at 2836.296 kb on + strand at 2836.353 kb on + strand at 2836.356 kb on - strand at 2836.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 2,833,896 - Dshi_2676 0.53 +0.2 2,833,946 + Dshi_2676 0.56 -0.2 2,834,083 - Dshi_2676 0.62 -0.1 2,834,117 - Dshi_2676 0.64 +0.4 2,834,130 - Dshi_2676 0.65 -0.6 2,834,208 - Dshi_2676 0.68 -0.3 2,834,407 + Dshi_2676 0.78 -1.9 2,834,415 - Dshi_2676 0.79 -0.5 2,834,420 + Dshi_2676 0.79 +0.7 2,834,438 - Dshi_2676 0.80 +1.0 2,834,651 + +0.3 2,834,792 + +0.1 2,834,802 + -0.3 2,834,952 + Dshi_2677 0.15 -0.2 2,834,952 + Dshi_2677 0.15 -0.4 2,834,967 - Dshi_2677 0.18 -0.4 2,834,978 - Dshi_2677 0.19 -0.4 2,834,981 - Dshi_2677 0.20 -0.1 2,835,009 - Dshi_2677 0.24 +0.4 2,835,043 - Dshi_2677 0.28 -0.3 2,835,162 - Dshi_2677 0.45 +1.0 2,835,173 - Dshi_2677 0.47 +0.2 2,835,178 - Dshi_2677 0.48 +0.5 2,835,256 - Dshi_2677 0.59 -0.1 2,835,295 + Dshi_2677 0.64 +1.3 2,835,305 + Dshi_2677 0.66 +0.2 2,835,330 + Dshi_2677 0.69 +0.6 2,835,334 - Dshi_2677 0.70 -1.3 2,835,350 + Dshi_2677 0.72 -0.3 2,835,437 + Dshi_2677 0.84 +0.7 2,835,484 - -0.4 2,835,575 + +0.4 2,835,615 + +0.2 2,835,628 - +0.7 2,835,677 + Dshi_2678 0.15 +0.1 2,835,695 - Dshi_2678 0.18 -0.6 2,835,765 - Dshi_2678 0.28 +0.2 2,835,776 + Dshi_2678 0.30 +1.5 2,835,781 + Dshi_2678 0.30 -1.2 2,835,847 - Dshi_2678 0.40 +1.5 2,835,851 - Dshi_2678 0.40 -1.5 2,836,296 + +0.0 2,836,353 + +1.8 2,836,356 - -0.8 2,836,409 - +0.5
Or see this region's nucleotide sequence