Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2628 and Dshi_2629 are separated by 27 nucleotides Dshi_2629 and Dshi_2630 are separated by 3 nucleotides Dshi_2630 and Dshi_2631 are separated by 131 nucleotides Dshi_2631 and Dshi_2632 are separated by 166 nucleotides Dshi_2632 and Dshi_2633 are separated by 50 nucleotides
Dshi_2628: Dshi_2628 - hypothetical protein (RefSeq), at 2,785,975 to 2,786,685
_2628
Dshi_2629: Dshi_2629 - protein of unknown function DUF1467 (RefSeq), at 2,786,713 to 2,787,000
_2629
Dshi_2630: Dshi_2630 - Methylmalonyl-CoA epimerase (RefSeq), at 2,787,004 to 2,787,408
_2630
Dshi_2631: Dshi_2631 - response regulator receiver protein (RefSeq), at 2,787,540 to 2,788,244
_2631
Dshi_2632: Dshi_2632 - hypothetical protein (RefSeq), at 2,788,411 to 2,788,605
_2632
Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data) , at 2,788,656 to 2,790,428
_2633
Position (kb)
2787
2788
2789 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2786.665 kb on - strand at 2786.743 kb on - strand, within Dshi_2629 at 2786.984 kb on - strand at 2787.002 kb on + strand at 2787.002 kb on + strand at 2787.010 kb on - strand at 2787.425 kb on - strand at 2787.451 kb on + strand at 2787.544 kb on - strand at 2787.765 kb on - strand, within Dshi_2631 at 2787.863 kb on + strand, within Dshi_2631 at 2787.920 kb on + strand, within Dshi_2631 at 2788.019 kb on - strand, within Dshi_2631 at 2788.036 kb on - strand, within Dshi_2631 at 2788.066 kb on + strand, within Dshi_2631 at 2788.093 kb on - strand, within Dshi_2631 at 2788.385 kb on + strand at 2788.553 kb on + strand, within Dshi_2632 at 2788.578 kb on + strand, within Dshi_2632
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 2,786,665 - -0.3 2,786,743 - Dshi_2629 0.10 +1.4 2,786,984 - -1.6 2,787,002 + -1.7 2,787,002 + -0.3 2,787,010 - +1.9 2,787,425 - +0.1 2,787,451 + -0.1 2,787,544 - +0.8 2,787,765 - Dshi_2631 0.32 +0.4 2,787,863 + Dshi_2631 0.46 -0.2 2,787,920 + Dshi_2631 0.54 +0.5 2,788,019 - Dshi_2631 0.68 +3.4 2,788,036 - Dshi_2631 0.70 -0.4 2,788,066 + Dshi_2631 0.75 +1.0 2,788,093 - Dshi_2631 0.78 +1.7 2,788,385 + -0.4 2,788,553 + Dshi_2632 0.73 +0.6 2,788,578 + Dshi_2632 0.86 +0.1
Or see this region's nucleotide sequence