Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2359 and Dshi_2360 are separated by 125 nucleotides Dshi_2360 and Dshi_2361 overlap by 8 nucleotides Dshi_2361 and Dshi_2362 overlap by 4 nucleotides Dshi_2362 and Dshi_2363 are separated by 1 nucleotides
Dshi_2359: Dshi_2359 - hypothetical protein (RefSeq), at 2,493,841 to 2,495,091
_2359
Dshi_2360: Dshi_2360 - urease accessory protein UreG (RefSeq), at 2,495,217 to 2,495,825
_2360
Dshi_2361: Dshi_2361 - Carboxymuconolactone decarboxylase (RefSeq), at 2,495,818 to 2,496,201
_2361
Dshi_2362: Dshi_2362 - Urease accessory protein UreF (RefSeq), at 2,496,198 to 2,496,830
_2362
Dshi_2363: Dshi_2363 - UreE urease accessory domain protein (RefSeq), at 2,496,832 to 2,497,314
_2363
Position (kb)
2495
2496
2497 Strain fitness (log2 ratio)
-1
0
1 at 2494.900 kb on - strand, within Dshi_2359 at 2495.212 kb on + strand at 2495.334 kb on - strand, within Dshi_2360 at 2495.388 kb on - strand, within Dshi_2360 at 2495.405 kb on + strand, within Dshi_2360 at 2495.438 kb on - strand, within Dshi_2360 at 2495.438 kb on - strand, within Dshi_2360 at 2495.502 kb on + strand, within Dshi_2360 at 2495.616 kb on + strand, within Dshi_2360 at 2495.632 kb on + strand, within Dshi_2360 at 2495.700 kb on - strand, within Dshi_2360 at 2495.725 kb on - strand, within Dshi_2360 at 2495.738 kb on + strand, within Dshi_2360 at 2495.746 kb on - strand, within Dshi_2360 at 2495.751 kb on - strand, within Dshi_2360 at 2495.946 kb on - strand, within Dshi_2361 at 2495.997 kb on - strand, within Dshi_2361 at 2496.069 kb on - strand at 2496.257 kb on + strand at 2496.386 kb on + strand, within Dshi_2362 at 2496.434 kb on - strand, within Dshi_2362 at 2496.534 kb on + strand, within Dshi_2362 at 2496.555 kb on - strand, within Dshi_2362 at 2496.580 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.676 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.688 kb on + strand, within Dshi_2362 at 2496.746 kb on + strand, within Dshi_2362 at 2496.754 kb on - strand, within Dshi_2362 at 2496.854 kb on - strand at 2496.866 kb on - strand at 2496.897 kb on - strand, within Dshi_2363 at 2496.897 kb on - strand, within Dshi_2363 at 2497.069 kb on + strand, within Dshi_2363 at 2497.139 kb on - strand, within Dshi_2363 at 2497.166 kb on - strand, within Dshi_2363
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 2,494,900 - Dshi_2359 0.85 +0.7 2,495,212 + -0.1 2,495,334 - Dshi_2360 0.19 +0.2 2,495,388 - Dshi_2360 0.28 +0.1 2,495,405 + Dshi_2360 0.31 -0.3 2,495,438 - Dshi_2360 0.36 -0.4 2,495,438 - Dshi_2360 0.36 -0.3 2,495,502 + Dshi_2360 0.47 -0.7 2,495,616 + Dshi_2360 0.66 +0.7 2,495,632 + Dshi_2360 0.68 +0.4 2,495,700 - Dshi_2360 0.79 +1.1 2,495,725 - Dshi_2360 0.83 +1.6 2,495,738 + Dshi_2360 0.86 +0.3 2,495,746 - Dshi_2360 0.87 -0.4 2,495,751 - Dshi_2360 0.88 +0.7 2,495,946 - Dshi_2361 0.33 +0.6 2,495,997 - Dshi_2361 0.47 +1.4 2,496,069 - -0.3 2,496,257 + +0.8 2,496,386 + Dshi_2362 0.30 -0.8 2,496,434 - Dshi_2362 0.37 -0.3 2,496,534 + Dshi_2362 0.53 -0.3 2,496,555 - Dshi_2362 0.56 -0.3 2,496,580 + Dshi_2362 0.60 +0.7 2,496,676 + Dshi_2362 0.76 -0.5 2,496,676 + Dshi_2362 0.76 -0.1 2,496,676 + Dshi_2362 0.76 -1.0 2,496,688 + Dshi_2362 0.77 +0.7 2,496,688 + Dshi_2362 0.77 +0.9 2,496,746 + Dshi_2362 0.87 -0.3 2,496,754 - Dshi_2362 0.88 +0.5 2,496,854 - -0.2 2,496,866 - +0.7 2,496,897 - Dshi_2363 0.13 +0.2 2,496,897 - Dshi_2363 0.13 +0.8 2,497,069 + Dshi_2363 0.49 -0.6 2,497,139 - Dshi_2363 0.64 +0.2 2,497,166 - Dshi_2363 0.69 -0.3
Or see this region's nucleotide sequence