Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2356 and Dshi_2357 are separated by 142 nucleotides Dshi_2357 and Dshi_2358 are separated by 207 nucleotides
Dshi_2356: Dshi_2356 - ATPase associated with various cellular activities AAA_5 (RefSeq), at 2,490,196 to 2,491,107
_2356
Dshi_2357: Dshi_2357 - acyl-CoA dehydrogenase domain protein (RefSeq), at 2,491,250 to 2,492,470
_2357
Dshi_2358: Dshi_2358 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,492,678 to 2,493,325
_2358
Position (kb)
2491
2492
2493 Strain fitness (log2 ratio)
-1
0
1 at 2490.525 kb on - strand, within Dshi_2356 at 2490.810 kb on - strand, within Dshi_2356 at 2490.859 kb on - strand, within Dshi_2356 at 2490.910 kb on + strand, within Dshi_2356 at 2491.134 kb on - strand at 2491.139 kb on - strand at 2491.291 kb on + strand at 2491.306 kb on - strand at 2491.316 kb on - strand at 2491.454 kb on + strand, within Dshi_2357 at 2491.528 kb on - strand, within Dshi_2357 at 2491.528 kb on - strand, within Dshi_2357 at 2491.689 kb on + strand, within Dshi_2357 at 2491.697 kb on - strand, within Dshi_2357 at 2491.715 kb on + strand, within Dshi_2357 at 2491.730 kb on + strand, within Dshi_2357 at 2491.887 kb on + strand, within Dshi_2357 at 2491.993 kb on + strand, within Dshi_2357 at 2492.109 kb on + strand, within Dshi_2357 at 2492.360 kb on - strand at 2492.361 kb on - strand at 2492.397 kb on + strand at 2492.398 kb on - strand at 2492.417 kb on - strand at 2492.428 kb on + strand at 2492.472 kb on + strand at 2492.480 kb on - strand at 2492.562 kb on - strand at 2492.576 kb on + strand at 2492.576 kb on + strand at 2492.712 kb on - strand at 2492.779 kb on - strand, within Dshi_2358 at 2492.812 kb on + strand, within Dshi_2358 at 2492.908 kb on - strand, within Dshi_2358 at 2492.920 kb on - strand, within Dshi_2358 at 2492.970 kb on + strand, within Dshi_2358 at 2492.970 kb on + strand, within Dshi_2358 at 2492.997 kb on + strand, within Dshi_2358 at 2493.070 kb on + strand, within Dshi_2358 at 2493.155 kb on + strand, within Dshi_2358 at 2493.163 kb on - strand, within Dshi_2358 at 2493.188 kb on + strand, within Dshi_2358 at 2493.201 kb on - strand, within Dshi_2358 at 2493.201 kb on - strand, within Dshi_2358 at 2493.235 kb on - strand, within Dshi_2358 at 2493.240 kb on + strand, within Dshi_2358 at 2493.250 kb on + strand, within Dshi_2358 at 2493.288 kb on + strand at 2493.358 kb on + strand at 2493.390 kb on - strand at 2493.455 kb on + strand at 2493.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 2,490,525 - Dshi_2356 0.36 +0.3 2,490,810 - Dshi_2356 0.67 +0.3 2,490,859 - Dshi_2356 0.73 +0.1 2,490,910 + Dshi_2356 0.78 +0.1 2,491,134 - +0.0 2,491,139 - +0.7 2,491,291 + -1.3 2,491,306 - -0.5 2,491,316 - -0.1 2,491,454 + Dshi_2357 0.17 +0.1 2,491,528 - Dshi_2357 0.23 +0.2 2,491,528 - Dshi_2357 0.23 +0.2 2,491,689 + Dshi_2357 0.36 -1.1 2,491,697 - Dshi_2357 0.37 -0.5 2,491,715 + Dshi_2357 0.38 -0.7 2,491,730 + Dshi_2357 0.39 +0.3 2,491,887 + Dshi_2357 0.52 -1.3 2,491,993 + Dshi_2357 0.61 -1.7 2,492,109 + Dshi_2357 0.70 -0.5 2,492,360 - -0.8 2,492,361 - -0.7 2,492,397 + +0.3 2,492,398 - +0.3 2,492,417 - -0.1 2,492,428 + -0.1 2,492,472 + -0.3 2,492,480 - -0.9 2,492,562 - -0.2 2,492,576 + -0.6 2,492,576 + +0.2 2,492,712 - -0.7 2,492,779 - Dshi_2358 0.16 +0.3 2,492,812 + Dshi_2358 0.21 +0.0 2,492,908 - Dshi_2358 0.35 -1.3 2,492,920 - Dshi_2358 0.37 +1.0 2,492,970 + Dshi_2358 0.45 +0.4 2,492,970 + Dshi_2358 0.45 +0.3 2,492,997 + Dshi_2358 0.49 -0.3 2,493,070 + Dshi_2358 0.60 -0.6 2,493,155 + Dshi_2358 0.74 +0.7 2,493,163 - Dshi_2358 0.75 +0.9 2,493,188 + Dshi_2358 0.79 +0.3 2,493,201 - Dshi_2358 0.81 -0.8 2,493,201 - Dshi_2358 0.81 +0.4 2,493,235 - Dshi_2358 0.86 +1.1 2,493,240 + Dshi_2358 0.87 -0.3 2,493,250 + Dshi_2358 0.88 -0.4 2,493,288 + +0.6 2,493,358 + +0.1 2,493,390 - -0.3 2,493,455 + -0.6 2,493,463 - +0.0
Or see this region's nucleotide sequence