Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1806 and Dshi_1807 are separated by 270 nucleotides Dshi_1807 and Dshi_1808 are separated by 11 nucleotides Dshi_1808 and Dshi_1809 are separated by 159 nucleotides
Dshi_1806: Dshi_1806 - citrate synthase I (RefSeq), at 1,879,651 to 1,880,943
_1806
Dshi_1807: Dshi_1807 - UspA domain protein (RefSeq), at 1,881,214 to 1,881,651
_1807
Dshi_1808: Dshi_1808 - amino acid carrier protein (RefSeq), at 1,881,663 to 1,883,201
_1808
Dshi_1809: Dshi_1809 - excinuclease ABC, A subunit (RefSeq), at 1,883,361 to 1,886,222
_1809
Position (kb)
1881
1882
1883
1884 Strain fitness (log2 ratio)
-2
-1
0
1 at 1880.929 kb on - strand at 1881.185 kb on - strand at 1881.277 kb on + strand, within Dshi_1807 at 1881.728 kb on + strand at 1881.928 kb on - strand, within Dshi_1808 at 1881.980 kb on + strand, within Dshi_1808 at 1881.992 kb on + strand, within Dshi_1808 at 1882.234 kb on - strand, within Dshi_1808 at 1882.326 kb on + strand, within Dshi_1808 at 1882.344 kb on - strand, within Dshi_1808 at 1882.353 kb on + strand, within Dshi_1808 at 1882.434 kb on + strand, within Dshi_1808 at 1882.654 kb on + strand, within Dshi_1808 at 1882.678 kb on + strand, within Dshi_1808 at 1882.747 kb on + strand, within Dshi_1808 at 1882.755 kb on - strand, within Dshi_1808 at 1882.870 kb on + strand, within Dshi_1808 at 1883.014 kb on + strand, within Dshi_1808 at 1883.163 kb on + strand at 1883.304 kb on - strand at 1883.383 kb on + strand at 1883.406 kb on - strand at 1883.521 kb on + strand at 1883.565 kb on + strand at 1883.646 kb on + strand at 1883.844 kb on - strand, within Dshi_1809 at 1883.887 kb on - strand, within Dshi_1809 at 1883.916 kb on + strand, within Dshi_1809 at 1884.037 kb on - strand, within Dshi_1809 at 1884.188 kb on - strand, within Dshi_1809
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 1,880,929 - -0.1 1,881,185 - +0.5 1,881,277 + Dshi_1807 0.14 +0.7 1,881,728 + -0.1 1,881,928 - Dshi_1808 0.17 -1.8 1,881,980 + Dshi_1808 0.21 -0.6 1,881,992 + Dshi_1808 0.21 -0.6 1,882,234 - Dshi_1808 0.37 +0.5 1,882,326 + Dshi_1808 0.43 -0.9 1,882,344 - Dshi_1808 0.44 -0.4 1,882,353 + Dshi_1808 0.45 -0.5 1,882,434 + Dshi_1808 0.50 -0.8 1,882,654 + Dshi_1808 0.64 -0.6 1,882,678 + Dshi_1808 0.66 -0.8 1,882,747 + Dshi_1808 0.70 -0.2 1,882,755 - Dshi_1808 0.71 -1.1 1,882,870 + Dshi_1808 0.78 -0.7 1,883,014 + Dshi_1808 0.88 -0.8 1,883,163 + -0.5 1,883,304 - +0.4 1,883,383 + -0.6 1,883,406 - +0.5 1,883,521 + -1.0 1,883,565 + +0.6 1,883,646 + -0.2 1,883,844 - Dshi_1809 0.17 +0.2 1,883,887 - Dshi_1809 0.18 -1.6 1,883,916 + Dshi_1809 0.19 +1.5 1,884,037 - Dshi_1809 0.24 +0.5 1,884,188 - Dshi_1809 0.29 -0.9
Or see this region's nucleotide sequence