Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0803 and Dshi_0804 are separated by 109 nucleotides Dshi_0804 and Dshi_0805 are separated by 33 nucleotides
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Dshi_0804: Dshi_0804 - glucose-methanol-choline oxidoreductase (RefSeq), at 810,647 to 812,269
_0804
Dshi_0805: Dshi_0805 - thiamine pyrophosphate protein central region (RefSeq), at 812,303 to 814,081
_0805
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -1
0
1
2 at 809.698 kb on - strand, within Dshi_0803 at 809.779 kb on + strand, within Dshi_0803 at 809.805 kb on + strand, within Dshi_0803 at 809.847 kb on + strand, within Dshi_0803 at 809.854 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.944 kb on - strand, within Dshi_0803 at 809.975 kb on - strand, within Dshi_0803 at 810.035 kb on + strand, within Dshi_0803 at 810.068 kb on + strand, within Dshi_0803 at 810.103 kb on + strand, within Dshi_0803 at 810.104 kb on + strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.256 kb on + strand, within Dshi_0803 at 810.267 kb on + strand, within Dshi_0803 at 810.336 kb on - strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.353 kb on - strand, within Dshi_0803 at 810.356 kb on + strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.366 kb on + strand, within Dshi_0803 at 810.520 kb on - strand at 810.552 kb on - strand at 810.658 kb on - strand at 810.706 kb on + strand at 810.717 kb on - strand at 810.793 kb on + strand at 810.816 kb on - strand, within Dshi_0804 at 810.859 kb on - strand, within Dshi_0804 at 810.947 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 811.180 kb on - strand, within Dshi_0804 at 811.181 kb on + strand, within Dshi_0804 at 811.276 kb on - strand, within Dshi_0804 at 811.300 kb on - strand, within Dshi_0804 at 811.332 kb on - strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.337 kb on + strand, within Dshi_0804 at 811.344 kb on - strand, within Dshi_0804 at 811.360 kb on + strand, within Dshi_0804 at 811.366 kb on + strand, within Dshi_0804 at 811.396 kb on - strand, within Dshi_0804 at 811.426 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804 at 811.565 kb on - strand, within Dshi_0804 at 811.570 kb on - strand, within Dshi_0804 at 811.726 kb on - strand, within Dshi_0804 at 811.830 kb on + strand, within Dshi_0804 at 812.025 kb on - strand, within Dshi_0804 at 812.037 kb on - strand, within Dshi_0804 at 812.053 kb on + strand, within Dshi_0804 at 812.091 kb on - strand, within Dshi_0804 at 812.236 kb on + strand at 812.266 kb on - strand at 812.266 kb on - strand at 812.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 809,698 - Dshi_0803 0.32 -1.0 809,779 + Dshi_0803 0.38 +0.1 809,805 + Dshi_0803 0.41 +1.0 809,847 + Dshi_0803 0.44 -0.2 809,854 - Dshi_0803 0.45 +0.7 809,920 - Dshi_0803 0.50 +0.1 809,920 - Dshi_0803 0.50 -0.4 809,944 - Dshi_0803 0.52 +0.7 809,975 - Dshi_0803 0.54 -0.1 810,035 + Dshi_0803 0.59 -1.1 810,068 + Dshi_0803 0.62 +2.1 810,103 + Dshi_0803 0.65 +0.7 810,104 + Dshi_0803 0.65 +0.8 810,117 - Dshi_0803 0.66 +0.2 810,117 - Dshi_0803 0.66 -0.0 810,256 + Dshi_0803 0.77 -0.3 810,267 + Dshi_0803 0.78 +0.1 810,336 - Dshi_0803 0.84 -0.9 810,339 + Dshi_0803 0.84 +0.2 810,339 + Dshi_0803 0.84 +0.0 810,353 - Dshi_0803 0.85 +0.4 810,356 + Dshi_0803 0.85 +1.1 810,364 - Dshi_0803 0.86 -0.2 810,364 - Dshi_0803 0.86 +0.1 810,366 + Dshi_0803 0.86 -0.0 810,520 - -0.0 810,552 - +0.1 810,658 - -0.3 810,706 + -0.1 810,717 - -0.1 810,793 + +0.7 810,816 - Dshi_0804 0.10 +1.7 810,859 - Dshi_0804 0.13 +1.4 810,947 + Dshi_0804 0.18 +0.9 810,980 + Dshi_0804 0.21 -1.0 810,980 + Dshi_0804 0.21 +0.9 811,180 - Dshi_0804 0.33 +0.8 811,181 + Dshi_0804 0.33 +0.4 811,276 - Dshi_0804 0.39 +0.4 811,300 - Dshi_0804 0.40 +0.5 811,332 - Dshi_0804 0.42 +0.0 811,336 + Dshi_0804 0.42 -0.2 811,336 + Dshi_0804 0.42 +1.0 811,337 + Dshi_0804 0.43 -0.7 811,344 - Dshi_0804 0.43 +0.5 811,360 + Dshi_0804 0.44 -1.6 811,366 + Dshi_0804 0.44 +0.2 811,396 - Dshi_0804 0.46 +0.4 811,426 - Dshi_0804 0.48 +0.2 811,481 - Dshi_0804 0.51 +0.8 811,481 - Dshi_0804 0.51 +1.8 811,565 - Dshi_0804 0.57 -1.1 811,570 - Dshi_0804 0.57 -0.9 811,726 - Dshi_0804 0.66 -0.0 811,830 + Dshi_0804 0.73 -0.2 812,025 - Dshi_0804 0.85 +0.2 812,037 - Dshi_0804 0.86 -0.0 812,053 + Dshi_0804 0.87 +0.4 812,091 - Dshi_0804 0.89 +0.5 812,236 + +0.0 812,266 - -0.4 812,266 - +0.2 812,278 - -0.2
Or see this region's nucleotide sequence