Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0501

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0499 and Dshi_0500 overlap by 1 nucleotidesDshi_0500 and Dshi_0501 overlap by 4 nucleotidesDshi_0501 and Dshi_0502 are separated by 115 nucleotidesDshi_0502 and Dshi_0503 are separated by 58 nucleotides Dshi_0499: Dshi_0499 - hypothetical protein (RefSeq), at 484,107 to 485,120 _0499 Dshi_0500: Dshi_0500 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 485,120 to 485,656 _0500 Dshi_0501: Dshi_0501 - hypothetical protein (RefSeq), at 485,653 to 486,264 _0501 Dshi_0502: Dshi_0502 - cytoplasmic chaperone TorD family protein (RefSeq), at 486,380 to 487,042 _0502 Dshi_0503: Dshi_0503 - twin-arginine translocation pathway signal (RefSeq), at 487,101 to 487,310 _0503 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.655 kb on - strand, within Dshi_0499at 484.657 kb on + strand, within Dshi_0499at 484.662 kb on + strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.665 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.690 kb on - strand, within Dshi_0499at 484.693 kb on + strand, within Dshi_0499at 484.702 kb on + strand, within Dshi_0499at 484.718 kb on - strand, within Dshi_0499at 484.727 kb on + strand, within Dshi_0499at 484.735 kb on - strand, within Dshi_0499at 484.738 kb on - strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.741 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.742 kb on + strand, within Dshi_0499at 484.749 kb on - strand, within Dshi_0499at 484.750 kb on - strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.758 kb on + strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.766 kb on - strand, within Dshi_0499at 484.789 kb on - strand, within Dshi_0499at 484.799 kb on + strand, within Dshi_0499at 484.799 kb on - strand, within Dshi_0499at 484.805 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.813 kb on + strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.821 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.831 kb on - strand, within Dshi_0499at 484.840 kb on + strand, within Dshi_0499at 484.868 kb on + strand, within Dshi_0499at 484.876 kb on - strand, within Dshi_0499at 484.879 kb on + strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.887 kb on - strand, within Dshi_0499at 484.984 kb on - strand, within Dshi_0499at 485.013 kb on + strand, within Dshi_0499at 485.023 kb on + strandat 485.029 kb on + strandat 485.115 kb on + strandat 485.122 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.123 kb on - strandat 485.144 kb on + strandat 485.237 kb on - strandat 485.237 kb on - strand, within Dshi_0500at 485.354 kb on - strand, within Dshi_0500at 485.379 kb on + strand, within Dshi_0500at 485.467 kb on + strand, within Dshi_0500at 485.485 kb on - strand, within Dshi_0500at 485.562 kb on + strand, within Dshi_0500at 485.579 kb on + strand, within Dshi_0500at 485.755 kb on - strand, within Dshi_0501at 485.770 kb on - strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.813 kb on - strand, within Dshi_0501at 485.853 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.939 kb on - strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.958 kb on + strand, within Dshi_0501at 486.014 kb on + strand, within Dshi_0501at 486.018 kb on + strand, within Dshi_0501at 486.035 kb on - strand, within Dshi_0501at 486.059 kb on - strand, within Dshi_0501at 486.069 kb on + strand, within Dshi_0501at 486.081 kb on + strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.099 kb on - strand, within Dshi_0501at 486.126 kb on + strand, within Dshi_0501at 486.134 kb on - strand, within Dshi_0501at 486.199 kb on + strand, within Dshi_0501at 486.214 kb on - strandat 486.267 kb on + strandat 486.371 kb on + strandat 486.393 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.411 kb on - strandat 486.411 kb on - strandat 486.511 kb on - strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.552 kb on - strand, within Dshi_0502at 486.554 kb on + strand, within Dshi_0502at 486.559 kb on + strand, within Dshi_0502at 486.562 kb on - strand, within Dshi_0502at 486.624 kb on - strand, within Dshi_0502at 486.646 kb on + strand, within Dshi_0502at 486.691 kb on - strand, within Dshi_0502at 486.721 kb on + strand, within Dshi_0502at 486.734 kb on - strand, within Dshi_0502at 486.824 kb on + strand, within Dshi_0502at 486.832 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.840 kb on + strand, within Dshi_0502at 486.848 kb on - strand, within Dshi_0502at 486.887 kb on + strand, within Dshi_0502at 486.902 kb on + strand, within Dshi_0502at 486.939 kb on + strand, within Dshi_0502at 486.947 kb on - strand, within Dshi_0502at 486.978 kb on - strandat 487.022 kb on - strandat 487.087 kb on + strandat 487.170 kb on + strand, within Dshi_0503at 487.178 kb on - strand, within Dshi_0503at 487.179 kb on + strand, within Dshi_0503at 487.220 kb on + strand, within Dshi_0503at 487.228 kb on - strand, within Dshi_0503

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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484,655 - Dshi_0499 0.54 -0.2
484,655 - Dshi_0499 0.54 -1.2
484,655 - Dshi_0499 0.54 +0.2
484,657 + Dshi_0499 0.54 +0.3
484,662 + Dshi_0499 0.55 -0.2
484,665 - Dshi_0499 0.55 +0.6
484,665 - Dshi_0499 0.55 +0.3
484,690 - Dshi_0499 0.57 +0.5
484,690 - Dshi_0499 0.57 +0.1
484,693 + Dshi_0499 0.58 +0.3
484,702 + Dshi_0499 0.59 -0.1
484,718 - Dshi_0499 0.60 -0.1
484,727 + Dshi_0499 0.61 +0.5
484,735 - Dshi_0499 0.62 +1.1
484,738 - Dshi_0499 0.62 +0.5
484,741 + Dshi_0499 0.63 -0.5
484,741 + Dshi_0499 0.63 +0.3
484,741 + Dshi_0499 0.63 -0.2
484,742 + Dshi_0499 0.63 +0.5
484,742 + Dshi_0499 0.63 +0.0
484,749 - Dshi_0499 0.63 -0.3
484,750 - Dshi_0499 0.63 -0.1
484,758 + Dshi_0499 0.64 -1.4
484,758 + Dshi_0499 0.64 +0.3
484,766 - Dshi_0499 0.65 +0.0
484,766 - Dshi_0499 0.65 +0.0
484,766 - Dshi_0499 0.65 +0.9
484,789 - Dshi_0499 0.67 +0.4
484,799 + Dshi_0499 0.68 +1.0
484,799 - Dshi_0499 0.68 -0.6
484,805 + Dshi_0499 0.69 -0.5
484,813 + Dshi_0499 0.70 -0.2
484,813 + Dshi_0499 0.70 +1.5
484,821 - Dshi_0499 0.70 +1.4
484,821 - Dshi_0499 0.70 -0.4
484,831 - Dshi_0499 0.71 +1.2
484,831 - Dshi_0499 0.71 -0.2
484,840 + Dshi_0499 0.72 +0.4
484,868 + Dshi_0499 0.75 -0.8
484,876 - Dshi_0499 0.76 -0.6
484,879 + Dshi_0499 0.76 +0.5
484,887 - Dshi_0499 0.77 +0.1
484,887 - Dshi_0499 0.77 +0.5
484,984 - Dshi_0499 0.86 -1.4
485,013 + Dshi_0499 0.89 -0.1
485,023 + +1.2
485,029 + -0.2
485,115 + +0.0
485,122 - -0.2
485,123 - +0.2
485,123 - -1.0
485,123 - -0.0
485,123 - +0.3
485,144 + -0.3
485,237 - -0.2
485,237 - Dshi_0500 0.22 +0.8
485,354 - Dshi_0500 0.44 -0.9
485,379 + Dshi_0500 0.48 +0.3
485,467 + Dshi_0500 0.65 -0.5
485,485 - Dshi_0500 0.68 +0.2
485,562 + Dshi_0500 0.82 -1.2
485,579 + Dshi_0500 0.85 +0.5
485,755 - Dshi_0501 0.17 +0.0
485,770 - Dshi_0501 0.19 -0.2
485,783 + Dshi_0501 0.21 -0.0
485,783 + Dshi_0501 0.21 -1.0
485,813 - Dshi_0501 0.26 -1.1
485,853 + Dshi_0501 0.33 +0.8
485,912 + Dshi_0501 0.42 -0.9
485,912 + Dshi_0501 0.42 +0.2
485,939 - Dshi_0501 0.47 -0.6
485,947 + Dshi_0501 0.48 -0.3
485,947 + Dshi_0501 0.48 -0.6
485,958 + Dshi_0501 0.50 -0.1
486,014 + Dshi_0501 0.59 -0.4
486,018 + Dshi_0501 0.60 +0.2
486,035 - Dshi_0501 0.62 -0.1
486,059 - Dshi_0501 0.66 -0.2
486,069 + Dshi_0501 0.68 +0.9
486,081 + Dshi_0501 0.70 -0.5
486,089 - Dshi_0501 0.71 +1.1
486,089 - Dshi_0501 0.71 -0.2
486,099 - Dshi_0501 0.73 -0.0
486,126 + Dshi_0501 0.77 +0.0
486,134 - Dshi_0501 0.79 +0.8
486,199 + Dshi_0501 0.89 -2.5
486,214 - +0.8
486,267 + -0.0
486,371 + -0.7
486,393 + -0.5
486,398 + -0.0
486,398 + -1.8
486,398 + +0.5
486,398 + +0.7
486,398 + +1.9
486,398 + +0.0
486,398 + +0.4
486,398 + -0.3
486,403 + -0.4
486,403 + +0.8
486,403 + +0.2
486,406 - +0.1
486,406 - -0.4
486,406 - -0.2
486,406 - +1.1
486,406 - +0.5
486,406 - +0.8
486,411 - +1.1
486,411 - -0.1
486,511 - Dshi_0502 0.20 +0.2
486,533 + Dshi_0502 0.23 -0.2
486,533 + Dshi_0502 0.23 +0.4
486,544 + Dshi_0502 0.25 -1.8
486,544 + Dshi_0502 0.25 +0.3
486,552 - Dshi_0502 0.26 -1.2
486,554 + Dshi_0502 0.26 -1.2
486,559 + Dshi_0502 0.27 -0.1
486,562 - Dshi_0502 0.27 -0.2
486,624 - Dshi_0502 0.37 +2.1
486,646 + Dshi_0502 0.40 -0.2
486,691 - Dshi_0502 0.47 -2.0
486,721 + Dshi_0502 0.51 +0.5
486,734 - Dshi_0502 0.53 +0.2
486,824 + Dshi_0502 0.67 +1.5
486,832 - Dshi_0502 0.68 +0.6
486,837 - Dshi_0502 0.69 +2.6
486,837 - Dshi_0502 0.69 +0.4
486,840 + Dshi_0502 0.69 +0.3
486,848 - Dshi_0502 0.71 -0.1
486,887 + Dshi_0502 0.76 +0.3
486,902 + Dshi_0502 0.79 +0.5
486,939 + Dshi_0502 0.84 +0.9
486,947 - Dshi_0502 0.86 -0.6
486,978 - +0.3
487,022 - -0.6
487,087 + -1.3
487,170 + Dshi_0503 0.33 -0.2
487,178 - Dshi_0503 0.37 -0.4
487,179 + Dshi_0503 0.37 +0.2
487,220 + Dshi_0503 0.57 +0.1
487,228 - Dshi_0503 0.60 +0.6

Or see this region's nucleotide sequence