Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3771

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3770 and Rru_A3771 overlap by 4 nucleotidesRru_A3771 and Rru_A3772 overlap by 11 nucleotidesRru_A3772 and Rru_A3773 overlap by 4 nucleotides Rru_A3770: Rru_A3770 - tRNA-i(6)A37 modification enzyme MiaB (NCBI), at 4,318,290 to 4,319,693 _A3770 Rru_A3771: Rru_A3771 - PhoH-like protein (NCBI), at 4,319,690 to 4,320,658 _A3771 Rru_A3772: Rru_A3772 - Protein of unknown function UPF0054 (NCBI), at 4,320,648 to 4,321,250 _A3772 Rru_A3773: Rru_A3773 - CBS domain protein (NCBI), at 4,321,247 to 4,322,203 _A3773 Position (kb) 4319 4320 4321Strain fitness (log2 ratio) -3 -2 -1 0 1at 4318.803 kb on + strand, within Rru_A3770at 4318.803 kb on + strand, within Rru_A3770at 4318.805 kb on + strand, within Rru_A3770at 4318.805 kb on + strand, within Rru_A3770at 4318.806 kb on - strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4318.917 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.007 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770at 4319.117 kb on + strand, within Rru_A3770at 4319.301 kb on + strand, within Rru_A3770at 4319.301 kb on + strand, within Rru_A3770at 4319.301 kb on + strand, within Rru_A3770at 4319.313 kb on + strand, within Rru_A3770at 4319.313 kb on + strand, within Rru_A3770at 4319.313 kb on + strand, within Rru_A3770at 4319.313 kb on + strand, within Rru_A3770at 4319.314 kb on - strand, within Rru_A3770at 4319.314 kb on - strand, within Rru_A3770at 4319.723 kb on + strandat 4319.723 kb on + strandat 4319.723 kb on + strandat 4319.724 kb on - strandat 4319.888 kb on + strand, within Rru_A3771at 4319.888 kb on + strand, within Rru_A3771at 4319.888 kb on + strand, within Rru_A3771at 4319.888 kb on + strand, within Rru_A3771at 4319.888 kb on + strand, within Rru_A3771at 4319.889 kb on - strand, within Rru_A3771at 4319.889 kb on - strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.098 kb on + strand, within Rru_A3771at 4320.099 kb on - strand, within Rru_A3771at 4320.099 kb on - strand, within Rru_A3771at 4320.099 kb on - strand, within Rru_A3771at 4320.233 kb on + strand, within Rru_A3771at 4320.248 kb on + strand, within Rru_A3771at 4320.248 kb on + strand, within Rru_A3771at 4320.248 kb on + strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.260 kb on + strand, within Rru_A3771at 4320.261 kb on - strand, within Rru_A3771at 4320.443 kb on - strand, within Rru_A3771at 4320.556 kb on + strand, within Rru_A3771at 4320.556 kb on + strand, within Rru_A3771at 4320.608 kb on + strandat 4320.608 kb on + strandat 4320.609 kb on - strandat 4321.492 kb on + strand, within Rru_A3773at 4321.492 kb on + strand, within Rru_A3773at 4321.492 kb on + strand, within Rru_A3773

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
remove
4,318,803 + Rru_A3770 0.37 -3.1
4,318,803 + Rru_A3770 0.37 -1.0
4,318,805 + Rru_A3770 0.37 -1.6
4,318,805 + Rru_A3770 0.37 -0.4
4,318,806 - Rru_A3770 0.37 -2.7
4,318,917 + Rru_A3770 0.45 -0.8
4,318,917 + Rru_A3770 0.45 -1.4
4,318,917 + Rru_A3770 0.45 +0.5
4,319,007 + Rru_A3770 0.51 -0.5
4,319,007 + Rru_A3770 0.51 -1.3
4,319,007 + Rru_A3770 0.51 -0.8
4,319,117 + Rru_A3770 0.59 -1.5
4,319,117 + Rru_A3770 0.59 -1.0
4,319,117 + Rru_A3770 0.59 -1.9
4,319,301 + Rru_A3770 0.72 -1.3
4,319,301 + Rru_A3770 0.72 -2.2
4,319,301 + Rru_A3770 0.72 -0.5
4,319,313 + Rru_A3770 0.73 -1.2
4,319,313 + Rru_A3770 0.73 -2.7
4,319,313 + Rru_A3770 0.73 -1.6
4,319,313 + Rru_A3770 0.73 -2.3
4,319,314 - Rru_A3770 0.73 -1.5
4,319,314 - Rru_A3770 0.73 +1.1
4,319,723 + -0.0
4,319,723 + +0.0
4,319,723 + +0.7
4,319,724 - +1.0
4,319,888 + Rru_A3771 0.20 -0.3
4,319,888 + Rru_A3771 0.20 +0.5
4,319,888 + Rru_A3771 0.20 +0.5
4,319,888 + Rru_A3771 0.20 -1.5
4,319,888 + Rru_A3771 0.20 +0.2
4,319,889 - Rru_A3771 0.21 -1.0
4,319,889 - Rru_A3771 0.21 -1.1
4,320,098 + Rru_A3771 0.42 +0.3
4,320,098 + Rru_A3771 0.42 +0.5
4,320,098 + Rru_A3771 0.42 +0.5
4,320,098 + Rru_A3771 0.42 +0.1
4,320,098 + Rru_A3771 0.42 +0.5
4,320,098 + Rru_A3771 0.42 +0.2
4,320,098 + Rru_A3771 0.42 -0.6
4,320,098 + Rru_A3771 0.42 +0.1
4,320,099 - Rru_A3771 0.42 -0.5
4,320,099 - Rru_A3771 0.42 +0.4
4,320,099 - Rru_A3771 0.42 +0.2
4,320,233 + Rru_A3771 0.56 +0.1
4,320,248 + Rru_A3771 0.58 +0.3
4,320,248 + Rru_A3771 0.58 +0.3
4,320,248 + Rru_A3771 0.58 -0.0
4,320,249 - Rru_A3771 0.58 -0.9
4,320,249 - Rru_A3771 0.58 +1.4
4,320,249 - Rru_A3771 0.58 -1.5
4,320,249 - Rru_A3771 0.58 -1.1
4,320,249 - Rru_A3771 0.58 +0.5
4,320,260 + Rru_A3771 0.59 +0.4
4,320,261 - Rru_A3771 0.59 -1.0
4,320,443 - Rru_A3771 0.78 -0.6
4,320,556 + Rru_A3771 0.89 -0.4
4,320,556 + Rru_A3771 0.89 -2.1
4,320,608 + -0.1
4,320,608 + +0.5
4,320,609 - -1.2
4,321,492 + Rru_A3773 0.26 -2.1
4,321,492 + Rru_A3773 0.26 -0.5
4,321,492 + Rru_A3773 0.26 +0.9

Or see this region's nucleotide sequence