Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1381

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1380 and Rru_A1381 are separated by 102 nucleotidesRru_A1381 and Rru_A1382 are separated by 41 nucleotidesRru_A1382 and Rru_A1383 are separated by 4 nucleotides Rru_A1380: Rru_A1380 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,628,125 to 1,629,300 _A1380 Rru_A1381: Rru_A1381 - Short chain fatty acid transporter (NCBI), at 1,629,403 to 1,630,851 _A1381 Rru_A1382: Rru_A1382 - Butyrate-acetoacetate CoA-transferase (NCBI), at 1,630,893 to 1,631,549 _A1382 Rru_A1383: Rru_A1383 - Acetate CoA-transferase (NCBI), at 1,631,554 to 1,632,207 _A1383 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -1 0 1at 1629.056 kb on + strand, within Rru_A1380at 1629.057 kb on - strand, within Rru_A1380at 1629.635 kb on + strand, within Rru_A1381at 1629.635 kb on + strand, within Rru_A1381at 1629.635 kb on + strand, within Rru_A1381at 1629.636 kb on - strand, within Rru_A1381at 1629.939 kb on + strand, within Rru_A1381at 1629.939 kb on + strand, within Rru_A1381at 1629.939 kb on + strand, within Rru_A1381at 1629.939 kb on + strand, within Rru_A1381at 1629.940 kb on - strand, within Rru_A1381at 1629.940 kb on - strand, within Rru_A1381at 1629.940 kb on - strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1629.941 kb on + strand, within Rru_A1381at 1630.002 kb on - strand, within Rru_A1381at 1630.160 kb on + strand, within Rru_A1381at 1630.197 kb on - strand, within Rru_A1381at 1630.197 kb on - strand, within Rru_A1381at 1630.349 kb on + strand, within Rru_A1381at 1630.350 kb on - strand, within Rru_A1381at 1630.350 kb on - strand, within Rru_A1381at 1630.350 kb on - strand, within Rru_A1381at 1630.350 kb on - strand, within Rru_A1381at 1630.373 kb on + strand, within Rru_A1381at 1630.374 kb on - strand, within Rru_A1381at 1630.455 kb on - strand, within Rru_A1381at 1630.568 kb on + strand, within Rru_A1381at 1630.568 kb on + strand, within Rru_A1381at 1630.768 kb on - strandat 1630.837 kb on + strandat 1630.879 kb on - strandat 1630.879 kb on - strandat 1630.879 kb on - strandat 1630.879 kb on - strandat 1630.879 kb on - strandat 1631.449 kb on + strand, within Rru_A1382at 1631.449 kb on + strand, within Rru_A1382at 1631.450 kb on - strand, within Rru_A1382at 1631.450 kb on - strand, within Rru_A1382at 1631.711 kb on + strand, within Rru_A1383

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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1,629,056 + Rru_A1380 0.79 +0.4
1,629,057 - Rru_A1380 0.79 +0.5
1,629,635 + Rru_A1381 0.16 +0.9
1,629,635 + Rru_A1381 0.16 +0.3
1,629,635 + Rru_A1381 0.16 +0.1
1,629,636 - Rru_A1381 0.16 +0.2
1,629,939 + Rru_A1381 0.37 +0.3
1,629,939 + Rru_A1381 0.37 -0.3
1,629,939 + Rru_A1381 0.37 +0.5
1,629,939 + Rru_A1381 0.37 +0.6
1,629,940 - Rru_A1381 0.37 +0.3
1,629,940 - Rru_A1381 0.37 +0.7
1,629,940 - Rru_A1381 0.37 -0.2
1,629,941 + Rru_A1381 0.37 +0.3
1,629,941 + Rru_A1381 0.37 +0.3
1,629,941 + Rru_A1381 0.37 +0.0
1,629,941 + Rru_A1381 0.37 +0.3
1,629,941 + Rru_A1381 0.37 +1.0
1,629,941 + Rru_A1381 0.37 +0.0
1,629,941 + Rru_A1381 0.37 -1.7
1,630,002 - Rru_A1381 0.41 +0.3
1,630,160 + Rru_A1381 0.52 +1.1
1,630,197 - Rru_A1381 0.55 +0.1
1,630,197 - Rru_A1381 0.55 -0.8
1,630,349 + Rru_A1381 0.65 +0.2
1,630,350 - Rru_A1381 0.65 +0.1
1,630,350 - Rru_A1381 0.65 -0.1
1,630,350 - Rru_A1381 0.65 +0.3
1,630,350 - Rru_A1381 0.65 +0.3
1,630,373 + Rru_A1381 0.67 +0.2
1,630,374 - Rru_A1381 0.67 +0.3
1,630,455 - Rru_A1381 0.73 +1.7
1,630,568 + Rru_A1381 0.80 +0.3
1,630,568 + Rru_A1381 0.80 -0.6
1,630,768 - +0.4
1,630,837 + -1.1
1,630,879 - +0.3
1,630,879 - -0.4
1,630,879 - +0.2
1,630,879 - -0.9
1,630,879 - +0.3
1,631,449 + Rru_A1382 0.85 +0.3
1,631,449 + Rru_A1382 0.85 +0.7
1,631,450 - Rru_A1382 0.85 +0.2
1,631,450 - Rru_A1382 0.85 -1.1
1,631,711 + Rru_A1383 0.24 -0.3

Or see this region's nucleotide sequence