Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1140

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1138 and Rru_A1139 overlap by 4 nucleotidesRru_A1139 and Rru_A1140 are separated by 373 nucleotidesRru_A1140 and Rru_A1141 are separated by 144 nucleotidesRru_A1141 and Rru_A1142 are separated by 28 nucleotides Rru_A1138: Rru_A1138 - ABC transporter component (NCBI), at 1,343,029 to 1,343,829 _A1138 Rru_A1139: Rru_A1139 - Blue (type 1) copper subtype (NCBI), at 1,343,826 to 1,344,278 _A1139 Rru_A1140: Rru_A1140 - Elongation factor G (NCBI), at 1,344,652 to 1,346,667 _A1140 Rru_A1141: Rru_A1141 - Protein of unknown function UPF0001 (NCBI), at 1,346,812 to 1,347,627 _A1141 Rru_A1142: Rru_A1142 - Glycine hydroxymethyltransferase (NCBI), at 1,347,656 to 1,348,960 _A1142 Position (kb) 1344 1345 1346 1347Strain fitness (log2 ratio) -2 -1 0 1at 1343.777 kb on - strandat 1343.777 kb on - strandat 1343.915 kb on + strand, within Rru_A1139at 1343.915 kb on + strand, within Rru_A1139at 1343.957 kb on + strand, within Rru_A1139at 1343.958 kb on - strand, within Rru_A1139at 1344.111 kb on + strand, within Rru_A1139at 1344.111 kb on + strand, within Rru_A1139at 1344.111 kb on + strand, within Rru_A1139at 1344.111 kb on + strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.112 kb on - strand, within Rru_A1139at 1344.310 kb on + strandat 1344.310 kb on + strandat 1344.329 kb on - strandat 1344.343 kb on + strandat 1344.344 kb on - strandat 1344.344 kb on - strandat 1344.500 kb on + strandat 1344.500 kb on + strandat 1344.501 kb on - strandat 1344.700 kb on + strandat 1344.701 kb on - strandat 1344.786 kb on + strandat 1344.787 kb on - strandat 1344.859 kb on + strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.860 kb on - strand, within Rru_A1140at 1344.922 kb on + strand, within Rru_A1140at 1344.922 kb on + strand, within Rru_A1140at 1344.922 kb on + strand, within Rru_A1140at 1344.922 kb on + strand, within Rru_A1140at 1344.923 kb on - strand, within Rru_A1140at 1344.923 kb on - strand, within Rru_A1140at 1344.923 kb on - strand, within Rru_A1140at 1345.035 kb on + strand, within Rru_A1140at 1345.035 kb on + strand, within Rru_A1140at 1345.036 kb on - strand, within Rru_A1140at 1345.036 kb on - strand, within Rru_A1140at 1345.036 kb on - strand, within Rru_A1140at 1345.201 kb on + strand, within Rru_A1140at 1345.201 kb on + strand, within Rru_A1140at 1345.202 kb on - strand, within Rru_A1140at 1345.202 kb on - strand, within Rru_A1140at 1345.301 kb on - strand, within Rru_A1140at 1345.360 kb on + strand, within Rru_A1140at 1345.360 kb on + strand, within Rru_A1140at 1345.360 kb on + strand, within Rru_A1140at 1345.360 kb on + strand, within Rru_A1140at 1345.361 kb on - strand, within Rru_A1140at 1345.361 kb on - strand, within Rru_A1140at 1345.560 kb on + strand, within Rru_A1140at 1345.560 kb on + strand, within Rru_A1140at 1345.560 kb on + strand, within Rru_A1140at 1345.561 kb on - strand, within Rru_A1140at 1345.561 kb on - strand, within Rru_A1140at 1345.681 kb on - strand, within Rru_A1140at 1346.014 kb on + strand, within Rru_A1140at 1346.014 kb on + strand, within Rru_A1140at 1346.014 kb on + strand, within Rru_A1140at 1346.014 kb on + strand, within Rru_A1140at 1346.014 kb on + strand, within Rru_A1140at 1346.015 kb on - strand, within Rru_A1140at 1346.015 kb on - strand, within Rru_A1140at 1346.015 kb on - strand, within Rru_A1140at 1346.015 kb on - strand, within Rru_A1140at 1346.016 kb on + strand, within Rru_A1140at 1346.017 kb on - strand, within Rru_A1140at 1346.106 kb on + strand, within Rru_A1140at 1346.180 kb on - strand, within Rru_A1140at 1346.180 kb on - strand, within Rru_A1140at 1346.180 kb on - strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.181 kb on + strand, within Rru_A1140at 1346.182 kb on - strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.278 kb on + strand, within Rru_A1140at 1346.279 kb on - strand, within Rru_A1140at 1346.279 kb on - strand, within Rru_A1140at 1346.465 kb on - strand, within Rru_A1140at 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.466 kb on + strandat 1346.467 kb on - strandat 1346.467 kb on - strandat 1346.467 kb on - strandat 1346.509 kb on + strandat 1346.510 kb on - strandat 1346.756 kb on - strandat 1346.756 kb on - strandat 1346.762 kb on + strandat 1346.762 kb on + strandat 1346.762 kb on + strandat 1346.763 kb on - strandat 1346.775 kb on + strandat 1346.776 kb on - strandat 1346.776 kb on - strandat 1346.776 kb on - strandat 1346.867 kb on + strandat 1346.867 kb on + strandat 1346.868 kb on - strandat 1346.951 kb on + strand, within Rru_A1141at 1346.952 kb on - strand, within Rru_A1141at 1346.952 kb on - strand, within Rru_A1141at 1347.127 kb on + strand, within Rru_A1141at 1347.128 kb on - strand, within Rru_A1141at 1347.136 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.299 kb on + strand, within Rru_A1141at 1347.300 kb on - strand, within Rru_A1141at 1347.628 kb on - strandat 1347.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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1,343,777 - -1.2
1,343,777 - +0.2
1,343,915 + Rru_A1139 0.20 -0.1
1,343,915 + Rru_A1139 0.20 -1.0
1,343,957 + Rru_A1139 0.29 +0.0
1,343,958 - Rru_A1139 0.29 -0.3
1,344,111 + Rru_A1139 0.63 -0.2
1,344,111 + Rru_A1139 0.63 +0.1
1,344,111 + Rru_A1139 0.63 -0.5
1,344,111 + Rru_A1139 0.63 -0.9
1,344,112 - Rru_A1139 0.63 -0.6
1,344,112 - Rru_A1139 0.63 +0.1
1,344,112 - Rru_A1139 0.63 -0.2
1,344,112 - Rru_A1139 0.63 -0.3
1,344,112 - Rru_A1139 0.63 -0.3
1,344,112 - Rru_A1139 0.63 +0.9
1,344,310 + -1.4
1,344,310 + -0.4
1,344,329 - -0.7
1,344,343 + -0.1
1,344,344 - +0.2
1,344,344 - +0.1
1,344,500 + -0.1
1,344,500 + -0.5
1,344,501 - -1.2
1,344,700 + +0.7
1,344,701 - -0.2
1,344,786 + -0.8
1,344,787 - -0.1
1,344,859 + Rru_A1140 0.10 -1.1
1,344,860 - Rru_A1140 0.10 -0.1
1,344,860 - Rru_A1140 0.10 -0.3
1,344,860 - Rru_A1140 0.10 -0.0
1,344,860 - Rru_A1140 0.10 -0.7
1,344,860 - Rru_A1140 0.10 -0.4
1,344,860 - Rru_A1140 0.10 -0.3
1,344,922 + Rru_A1140 0.13 +0.3
1,344,922 + Rru_A1140 0.13 -0.1
1,344,922 + Rru_A1140 0.13 +0.4
1,344,922 + Rru_A1140 0.13 -0.2
1,344,923 - Rru_A1140 0.13 -0.4
1,344,923 - Rru_A1140 0.13 +0.1
1,344,923 - Rru_A1140 0.13 -0.3
1,345,035 + Rru_A1140 0.19 +0.4
1,345,035 + Rru_A1140 0.19 -0.6
1,345,036 - Rru_A1140 0.19 -1.2
1,345,036 - Rru_A1140 0.19 -0.2
1,345,036 - Rru_A1140 0.19 +1.5
1,345,201 + Rru_A1140 0.27 -0.6
1,345,201 + Rru_A1140 0.27 -1.8
1,345,202 - Rru_A1140 0.27 -1.3
1,345,202 - Rru_A1140 0.27 +0.4
1,345,301 - Rru_A1140 0.32 -2.1
1,345,360 + Rru_A1140 0.35 -0.1
1,345,360 + Rru_A1140 0.35 -0.4
1,345,360 + Rru_A1140 0.35 -0.8
1,345,360 + Rru_A1140 0.35 -0.4
1,345,361 - Rru_A1140 0.35 -1.0
1,345,361 - Rru_A1140 0.35 +0.4
1,345,560 + Rru_A1140 0.45 -2.1
1,345,560 + Rru_A1140 0.45 +0.4
1,345,560 + Rru_A1140 0.45 -0.2
1,345,561 - Rru_A1140 0.45 -0.1
1,345,561 - Rru_A1140 0.45 -0.2
1,345,681 - Rru_A1140 0.51 -0.4
1,346,014 + Rru_A1140 0.68 -0.0
1,346,014 + Rru_A1140 0.68 +0.2
1,346,014 + Rru_A1140 0.68 -0.7
1,346,014 + Rru_A1140 0.68 -0.0
1,346,014 + Rru_A1140 0.68 -0.2
1,346,015 - Rru_A1140 0.68 -0.8
1,346,015 - Rru_A1140 0.68 +0.4
1,346,015 - Rru_A1140 0.68 +0.8
1,346,015 - Rru_A1140 0.68 +1.0
1,346,016 + Rru_A1140 0.68 +0.4
1,346,017 - Rru_A1140 0.68 -0.3
1,346,106 + Rru_A1140 0.72 -0.2
1,346,180 - Rru_A1140 0.76 -0.2
1,346,180 - Rru_A1140 0.76 -0.1
1,346,180 - Rru_A1140 0.76 -1.3
1,346,181 + Rru_A1140 0.76 -0.1
1,346,181 + Rru_A1140 0.76 +0.4
1,346,181 + Rru_A1140 0.76 +0.1
1,346,181 + Rru_A1140 0.76 -0.1
1,346,181 + Rru_A1140 0.76 +0.4
1,346,181 + Rru_A1140 0.76 -0.8
1,346,181 + Rru_A1140 0.76 +0.8
1,346,182 - Rru_A1140 0.76 -0.5
1,346,278 + Rru_A1140 0.81 -0.2
1,346,278 + Rru_A1140 0.81 -0.3
1,346,278 + Rru_A1140 0.81 +0.2
1,346,278 + Rru_A1140 0.81 -0.3
1,346,278 + Rru_A1140 0.81 -0.2
1,346,278 + Rru_A1140 0.81 +0.4
1,346,279 - Rru_A1140 0.81 +1.1
1,346,279 - Rru_A1140 0.81 -0.6
1,346,465 - Rru_A1140 0.90 +0.4
1,346,466 + -0.5
1,346,466 + -0.7
1,346,466 + -0.9
1,346,466 + -0.7
1,346,466 + -0.1
1,346,466 + -0.9
1,346,466 + -0.3
1,346,467 - -0.5
1,346,467 - +0.0
1,346,467 - +0.2
1,346,509 + -0.2
1,346,510 - -0.6
1,346,756 - +0.4
1,346,756 - +0.4
1,346,762 + -0.2
1,346,762 + +0.1
1,346,762 + -0.1
1,346,763 - +1.3
1,346,775 + -0.7
1,346,776 - +0.4
1,346,776 - -0.4
1,346,776 - -0.6
1,346,867 + -0.9
1,346,867 + -1.5
1,346,868 - -0.9
1,346,951 + Rru_A1141 0.17 -0.7
1,346,952 - Rru_A1141 0.17 -1.1
1,346,952 - Rru_A1141 0.17 -1.1
1,347,127 + Rru_A1141 0.39 -0.3
1,347,128 - Rru_A1141 0.39 -0.2
1,347,136 + Rru_A1141 0.40 +0.1
1,347,299 + Rru_A1141 0.60 -0.1
1,347,299 + Rru_A1141 0.60 -0.4
1,347,299 + Rru_A1141 0.60 +0.2
1,347,299 + Rru_A1141 0.60 -0.4
1,347,299 + Rru_A1141 0.60 -0.3
1,347,299 + Rru_A1141 0.60 -1.1
1,347,300 - Rru_A1141 0.60 -2.1
1,347,628 - +1.0
1,347,660 + -0.0

Or see this region's nucleotide sequence