Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0664 and Rru_A0665 are separated by 0 nucleotides Rru_A0665 and Rru_A0666 overlap by 4 nucleotides Rru_A0666 and Rru_A0667 are separated by 26 nucleotides
Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237
_A0664
Rru_A0665: Rru_A0665 - Response regulator receiver domain protein (CheY) (NCBI), at 788,238 to 788,684
_A0665
Rru_A0666: Rru_A0666 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 788,681 to 790,420
_A0666
Rru_A0667: Rru_A0667 - Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 790,447 to 791,454
_A0667
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.757 kb on + strand, within Rru_A0664 at 787.757 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 788.207 kb on + strand at 788.209 kb on + strand at 788.209 kb on + strand at 788.209 kb on + strand at 788.210 kb on - strand at 788.210 kb on - strand at 788.239 kb on + strand at 788.240 kb on - strand at 788.327 kb on + strand, within Rru_A0665 at 788.330 kb on + strand, within Rru_A0665 at 788.332 kb on + strand, within Rru_A0665 at 788.333 kb on - strand, within Rru_A0665 at 788.703 kb on + strand at 788.711 kb on + strand at 788.712 kb on - strand at 788.712 kb on - strand at 788.723 kb on + strand at 788.723 kb on + strand at 788.723 kb on + strand at 788.724 kb on - strand at 788.724 kb on - strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.730 kb on - strand at 788.731 kb on + strand at 788.731 kb on + strand at 788.731 kb on + strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.988 kb on + strand, within Rru_A0666 at 788.988 kb on + strand, within Rru_A0666 at 788.989 kb on - strand, within Rru_A0666 at 789.424 kb on + strand, within Rru_A0666 at 789.424 kb on + strand, within Rru_A0666 at 789.425 kb on - strand, within Rru_A0666 at 789.426 kb on + strand, within Rru_A0666 at 789.426 kb on + strand, within Rru_A0666 at 789.426 kb on + strand, within Rru_A0666 at 789.427 kb on - strand, within Rru_A0666 at 789.627 kb on + strand, within Rru_A0666 at 789.930 kb on + strand, within Rru_A0666 at 789.930 kb on + strand, within Rru_A0666 at 789.942 kb on + strand, within Rru_A0666 at 789.967 kb on - strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.059 kb on + strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.448 kb on + strand at 790.449 kb on - strand at 790.449 kb on - strand at 790.449 kb on - strand at 790.495 kb on - strand at 790.925 kb on + strand, within Rru_A0667 at 790.926 kb on - strand, within Rru_A0667 at 791.026 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 787,757 + Rru_A0664 0.54 +0.1 787,757 + Rru_A0664 0.54 -0.1 787,930 + Rru_A0664 0.70 +0.3 787,930 + Rru_A0664 0.70 -0.6 787,930 + Rru_A0664 0.70 +0.9 787,930 + Rru_A0664 0.70 -0.1 787,930 + Rru_A0664 0.70 -0.6 787,931 - Rru_A0664 0.70 -0.7 787,931 - Rru_A0664 0.70 -0.1 787,931 - Rru_A0664 0.70 +0.1 787,931 - Rru_A0664 0.70 +0.1 787,993 + Rru_A0664 0.76 +0.1 787,993 + Rru_A0664 0.76 -1.9 787,993 + Rru_A0664 0.76 -0.7 787,993 + Rru_A0664 0.76 -0.8 787,994 - Rru_A0664 0.76 +1.2 787,994 - Rru_A0664 0.76 -0.2 787,994 - Rru_A0664 0.76 -0.0 787,994 - Rru_A0664 0.76 -0.4 787,994 - Rru_A0664 0.76 +0.3 788,207 + +0.4 788,209 + -0.1 788,209 + -0.4 788,209 + -0.5 788,210 - +0.0 788,210 - -0.2 788,239 + +0.2 788,240 - -0.6 788,327 + Rru_A0665 0.20 -1.0 788,330 + Rru_A0665 0.21 -0.6 788,332 + Rru_A0665 0.21 -0.8 788,333 - Rru_A0665 0.21 -3.3 788,703 + -1.1 788,711 + -0.6 788,712 - -2.7 788,712 - +0.4 788,723 + +0.4 788,723 + -0.4 788,723 + -1.0 788,724 - -0.0 788,724 - +0.7 788,729 + -0.4 788,729 + -0.8 788,729 + -0.5 788,729 + +0.7 788,729 + -0.7 788,729 + -0.2 788,729 + -0.2 788,730 - -0.0 788,731 + -0.2 788,731 + +0.2 788,731 + +0.1 788,732 - -1.0 788,732 - -0.2 788,732 - -0.5 788,732 - -0.3 788,732 - -1.4 788,988 + Rru_A0666 0.18 +0.2 788,988 + Rru_A0666 0.18 -1.4 788,989 - Rru_A0666 0.18 +0.2 789,424 + Rru_A0666 0.43 -2.4 789,424 + Rru_A0666 0.43 -0.5 789,425 - Rru_A0666 0.43 -0.6 789,426 + Rru_A0666 0.43 +1.9 789,426 + Rru_A0666 0.43 -0.3 789,426 + Rru_A0666 0.43 +0.4 789,427 - Rru_A0666 0.43 -0.0 789,627 + Rru_A0666 0.54 +0.4 789,930 + Rru_A0666 0.72 -0.6 789,930 + Rru_A0666 0.72 -1.6 789,942 + Rru_A0666 0.72 +1.6 789,967 - Rru_A0666 0.74 +0.7 790,026 + Rru_A0666 0.77 +0.1 790,026 + Rru_A0666 0.77 +0.7 790,026 + Rru_A0666 0.77 +0.1 790,026 + Rru_A0666 0.77 +0.2 790,026 + Rru_A0666 0.77 -0.2 790,026 + Rru_A0666 0.77 -0.4 790,026 + Rru_A0666 0.77 -0.7 790,026 + Rru_A0666 0.77 +0.4 790,026 + Rru_A0666 0.77 -1.1 790,026 + Rru_A0666 0.77 -2.0 790,026 + Rru_A0666 0.77 -0.4 790,026 + Rru_A0666 0.77 +0.4 790,027 - Rru_A0666 0.77 -0.6 790,027 - Rru_A0666 0.77 -1.4 790,027 - Rru_A0666 0.77 -0.1 790,027 - Rru_A0666 0.77 -0.2 790,027 - Rru_A0666 0.77 -0.3 790,027 - Rru_A0666 0.77 +0.4 790,027 - Rru_A0666 0.77 -0.1 790,059 + Rru_A0666 0.79 -0.9 790,060 - Rru_A0666 0.79 +0.4 790,060 - Rru_A0666 0.79 -0.7 790,060 - Rru_A0666 0.79 -1.6 790,448 + -0.4 790,449 - -0.6 790,449 - +0.4 790,449 - -0.0 790,495 - -1.5 790,925 + Rru_A0667 0.47 -1.7 790,926 - Rru_A0667 0.48 -2.1 791,026 - Rru_A0667 0.57 +0.4 791,029 - Rru_A0667 0.58 -1.4 791,029 - Rru_A0667 0.58 -1.6
Or see this region's nucleotide sequence