Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0415 and Rru_A0416 are separated by 107 nucleotides Rru_A0416 and Rru_A0417 are separated by 194 nucleotides Rru_A0417 and Rru_A0418 are separated by 158 nucleotides
Rru_A0415: Rru_A0415 - Malonyl CoA-acyl carrier protein transacylase (NCBI), at 491,531 to 492,469
_A0415
Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314
_A0416
Rru_A0417: Rru_A0417 - Acyl carrier protein (ACP) (NCBI), at 493,509 to 493,742
_A0417
Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163
_A0418
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 492.467 kb on + strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.468 kb on - strand at 492.515 kb on + strand at 492.522 kb on - strand at 492.522 kb on - strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.405 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.410 kb on + strand at 493.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 492,467 + -0.6 492,468 - +0.5 492,468 - -2.9 492,468 - -1.7 492,468 - -0.6 492,468 - -1.4 492,468 - +0.5 492,515 + +0.1 492,522 - +0.5 492,522 - +0.5 493,405 + +0.3 493,405 + +0.7 493,405 + +0.5 493,405 + -0.6 493,410 + +0.0 493,410 + -2.9 493,410 + -0.9 493,426 + +0.2
Or see this region's nucleotide sequence