Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0392 and Rru_A0393 are separated by 14 nucleotides Rru_A0393 and Rru_A0394 are separated by 10 nucleotides Rru_A0394 and Rru_A0395 are separated by 240 nucleotides
Rru_A0392: Rru_A0392 - Molybdopterin binding domain (NCBI), at 468,486 to 469,253
_A0392
Rru_A0393: Rru_A0393 - NUDIX hydrolase (NCBI), at 469,268 to 469,723
_A0393
Rru_A0394: Rru_A0394 - Amino-acid N-acetyltransferase (NCBI), at 469,734 to 470,972
_A0394
Rru_A0395: Rru_A0395 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 471,213 to 472,139
_A0395
Position (kb) 469
470
471 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 468.925 kb on + strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392 at 468.926 kb on - strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.269 kb on + strand at 469.270 kb on - strand at 469.324 kb on - strand, within Rru_A0393 at 469.408 kb on - strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.765 kb on + strand at 469.765 kb on + strand at 469.765 kb on + strand at 469.766 kb on - strand at 469.853 kb on + strand at 469.853 kb on + strand at 469.854 kb on - strand at 469.879 kb on + strand, within Rru_A0394 at 470.371 kb on + strand, within Rru_A0394 at 470.371 kb on + strand, within Rru_A0394 at 470.482 kb on + strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.875 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 471.027 kb on + strand at 471.027 kb on + strand at 471.028 kb on - strand at 471.350 kb on + strand, within Rru_A0395 at 471.748 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 468,925 + Rru_A0392 0.57 -0.1 468,925 + Rru_A0392 0.57 +2.2 468,926 - Rru_A0392 0.57 -0.5 469,048 + Rru_A0392 0.73 -0.1 469,048 + Rru_A0392 0.73 +0.6 469,048 + Rru_A0392 0.73 -0.7 469,048 + Rru_A0392 0.73 +0.5 469,269 + -0.7 469,270 - +0.6 469,324 - Rru_A0393 0.12 +2.8 469,408 - Rru_A0393 0.31 -2.2 469,437 + Rru_A0393 0.37 -0.5 469,437 + Rru_A0393 0.37 -0.1 469,437 + Rru_A0393 0.37 -0.1 469,437 + Rru_A0393 0.37 -1.7 469,437 + Rru_A0393 0.37 -0.0 469,437 + Rru_A0393 0.37 -0.4 469,438 - Rru_A0393 0.37 -0.2 469,438 - Rru_A0393 0.37 -0.7 469,438 - Rru_A0393 0.37 -0.5 469,438 - Rru_A0393 0.37 -1.9 469,438 - Rru_A0393 0.37 -3.6 469,438 - Rru_A0393 0.37 +1.9 469,765 + -2.5 469,765 + -0.5 469,765 + -1.3 469,766 - -1.5 469,853 + +0.5 469,853 + -1.1 469,854 - -0.5 469,879 + Rru_A0394 0.12 -1.1 470,371 + Rru_A0394 0.51 -1.5 470,371 + Rru_A0394 0.51 -2.5 470,482 + Rru_A0394 0.60 -2.7 470,483 - Rru_A0394 0.60 -4.2 470,483 - Rru_A0394 0.60 +0.5 470,875 + -1.9 470,891 + -1.5 470,891 + +0.5 470,891 + -1.5 471,027 + +0.2 471,027 + -0.0 471,028 - -1.5 471,350 + Rru_A0395 0.15 -1.1 471,748 + Rru_A0395 0.58 -0.1 471,800 + Rru_A0395 0.63 -0.2 471,800 + Rru_A0395 0.63 +0.5 471,800 + Rru_A0395 0.63 -0.5 471,801 - Rru_A0395 0.63 +1.1 471,801 - Rru_A0395 0.63 -0.7 471,802 + Rru_A0395 0.64 -0.1 471,802 + Rru_A0395 0.64 -1.0 471,802 + Rru_A0395 0.64 -0.4 471,802 + Rru_A0395 0.64 -0.9 471,802 + Rru_A0395 0.64 +0.4 471,803 - Rru_A0395 0.64 -0.4 471,803 - Rru_A0395 0.64 +0.5 471,803 - Rru_A0395 0.64 -1.2 471,803 - Rru_A0395 0.64 +0.6 471,934 + Rru_A0395 0.78 +0.5 471,934 + Rru_A0395 0.78 +0.1 471,934 + Rru_A0395 0.78 -3.1 471,934 + Rru_A0395 0.78 -0.7 471,935 - Rru_A0395 0.78 +0.1 471,935 - Rru_A0395 0.78 -0.8
Or see this region's nucleotide sequence