Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0379 and Rru_A0380 are separated by 76 nucleotides Rru_A0380 and Rru_A0381 are separated by 42 nucleotides Rru_A0381 and Rru_A0382 are separated by 69 nucleotides Rru_A0382 and Rru_A0383 are separated by 135 nucleotides
Rru_A0379: Rru_A0379 - Flavodoxin, long chain (NCBI), at 457,849 to 458,331
_A0379
Rru_A0380: Rru_A0380 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 458,408 to 458,764
_A0380
Rru_A0381: Rru_A0381 - Major facilitator superfamily transporter MFS_1 (NCBI), at 458,807 to 460,051
_A0381
Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585
_A0382
Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086
_A0383
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 457.831 kb on + strand at 457.831 kb on + strand at 457.831 kb on + strand at 457.832 kb on - strand at 457.832 kb on - strand at 457.832 kb on - strand at 457.857 kb on + strand at 457.868 kb on - strand at 457.868 kb on - strand at 457.868 kb on - strand at 458.005 kb on + strand, within Rru_A0379 at 458.005 kb on + strand, within Rru_A0379 at 458.005 kb on + strand, within Rru_A0379 at 458.153 kb on - strand, within Rru_A0379 at 458.153 kb on - strand, within Rru_A0379 at 458.209 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.221 kb on + strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.444 kb on - strand, within Rru_A0380 at 458.444 kb on - strand, within Rru_A0380 at 458.444 kb on - strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.611 kb on - strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.619 kb on - strand, within Rru_A0380 at 458.749 kb on - strand at 458.792 kb on - strand at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.671 kb on - strand, within Rru_A0381 at 459.815 kb on + strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.877 kb on - strand, within Rru_A0381 at 460.004 kb on - strand at 460.051 kb on + strand at 460.052 kb on - strand at 460.184 kb on + strand, within Rru_A0382 at 460.185 kb on - strand, within Rru_A0382 at 460.474 kb on + strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.637 kb on + strand at 460.737 kb on - strand at 460.737 kb on - strand at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 461.001 kb on + strand, within Rru_A0383 at 461.002 kb on - strand, within Rru_A0383
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 457,831 + +0.6 457,831 + -0.9 457,831 + -2.5 457,832 - +1.7 457,832 - +0.0 457,832 - -0.3 457,857 + -0.5 457,868 - -0.2 457,868 - +0.5 457,868 - +0.5 458,005 + Rru_A0379 0.32 -0.1 458,005 + Rru_A0379 0.32 -1.8 458,005 + Rru_A0379 0.32 -0.1 458,153 - Rru_A0379 0.63 -0.3 458,153 - Rru_A0379 0.63 -0.5 458,209 + Rru_A0379 0.75 +0.3 458,215 + Rru_A0379 0.76 -0.3 458,215 + Rru_A0379 0.76 +0.2 458,215 + Rru_A0379 0.76 +0.6 458,215 + Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 +0.5 458,216 - Rru_A0379 0.76 +2.8 458,216 - Rru_A0379 0.76 -0.3 458,216 - Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 +0.2 458,217 + Rru_A0379 0.76 -0.2 458,217 + Rru_A0379 0.76 +0.5 458,217 + Rru_A0379 0.76 -0.4 458,217 + Rru_A0379 0.76 -0.1 458,217 + Rru_A0379 0.76 +0.7 458,217 + Rru_A0379 0.76 -0.1 458,217 + Rru_A0379 0.76 +0.5 458,218 - Rru_A0379 0.76 -0.7 458,218 - Rru_A0379 0.76 +1.0 458,218 - Rru_A0379 0.76 +0.0 458,218 - Rru_A0379 0.76 +0.4 458,218 - Rru_A0379 0.76 +0.2 458,218 - Rru_A0379 0.76 +1.1 458,218 - Rru_A0379 0.76 +0.5 458,221 + Rru_A0379 0.77 +0.5 458,222 - Rru_A0379 0.77 -1.0 458,222 - Rru_A0379 0.77 -0.2 458,222 - Rru_A0379 0.77 +0.0 458,222 - Rru_A0379 0.77 +0.0 458,222 - Rru_A0379 0.77 +0.1 458,222 - Rru_A0379 0.77 +0.5 458,444 - Rru_A0380 0.10 -1.8 458,444 - Rru_A0380 0.10 +0.1 458,444 - Rru_A0380 0.10 +0.5 458,446 + Rru_A0380 0.11 +1.3 458,446 + Rru_A0380 0.11 -0.1 458,446 + Rru_A0380 0.11 -0.8 458,446 + Rru_A0380 0.11 +0.0 458,489 + Rru_A0380 0.23 +0.0 458,489 + Rru_A0380 0.23 -0.3 458,489 + Rru_A0380 0.23 -1.2 458,490 - Rru_A0380 0.23 +0.6 458,490 - Rru_A0380 0.23 -0.4 458,490 - Rru_A0380 0.23 +0.5 458,611 - Rru_A0380 0.57 -0.4 458,618 + Rru_A0380 0.59 -0.2 458,618 + Rru_A0380 0.59 -0.4 458,618 + Rru_A0380 0.59 -0.2 458,618 + Rru_A0380 0.59 +0.2 458,618 + Rru_A0380 0.59 -0.1 458,618 + Rru_A0380 0.59 +0.6 458,618 + Rru_A0380 0.59 +0.2 458,618 + Rru_A0380 0.59 -0.6 458,619 - Rru_A0380 0.59 -0.4 458,749 - -0.1 458,792 - -0.0 459,138 + Rru_A0381 0.27 -0.0 459,138 + Rru_A0381 0.27 -0.4 459,138 + Rru_A0381 0.27 +0.5 459,345 + Rru_A0381 0.43 -0.1 459,345 + Rru_A0381 0.43 +0.8 459,345 + Rru_A0381 0.43 -0.4 459,345 + Rru_A0381 0.43 +0.1 459,345 + Rru_A0381 0.43 +0.7 459,346 - Rru_A0381 0.43 +1.6 459,346 - Rru_A0381 0.43 -1.6 459,346 - Rru_A0381 0.43 -0.5 459,346 - Rru_A0381 0.43 +0.4 459,346 - Rru_A0381 0.43 -0.5 459,346 - Rru_A0381 0.43 +0.2 459,671 - Rru_A0381 0.69 +0.1 459,815 + Rru_A0381 0.81 +0.6 459,816 - Rru_A0381 0.81 -1.0 459,816 - Rru_A0381 0.81 +1.6 459,816 - Rru_A0381 0.81 +1.0 459,877 - Rru_A0381 0.86 +1.5 460,004 - -0.6 460,051 + +1.7 460,052 - -1.1 460,184 + Rru_A0382 0.14 -2.0 460,185 - Rru_A0382 0.14 -0.1 460,474 + Rru_A0382 0.76 -0.2 460,475 - Rru_A0382 0.76 +0.7 460,475 - Rru_A0382 0.76 -1.3 460,637 + -1.7 460,737 - +0.0 460,737 - -0.0 460,821 - Rru_A0383 0.27 -0.4 460,821 - Rru_A0383 0.27 -0.3 460,821 - Rru_A0383 0.27 -0.3 460,821 - Rru_A0383 0.27 +0.1 460,850 + Rru_A0383 0.35 -1.7 460,850 + Rru_A0383 0.35 +0.3 460,850 + Rru_A0383 0.35 -1.0 461,001 + Rru_A0383 0.77 +0.0 461,002 - Rru_A0383 0.77 -0.5
Or see this region's nucleotide sequence