Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13525

Experiment: Growth at pH8 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) D-Glucose
3,063,665	-		PFLU_RS13515	0.59	-0.5
3,063,748	-		PFLU_RS13515	0.71	-0.1
3,063,792	+		PFLU_RS13515	0.77	-1.9
3,063,792	+		PFLU_RS13515	0.77	-1.9
3,063,792	+		PFLU_RS13515	0.77	+0.6
3,063,792	+		PFLU_RS13515	0.77	+0.9
3,063,792	+		PFLU_RS13515	0.77	-0.4
3,063,792	+		PFLU_RS13515	0.77	+0.8
3,063,792	+		PFLU_RS13515	0.77	+0.8
3,063,792	+		PFLU_RS13515	0.77	+0.9
3,063,792	+		PFLU_RS13515	0.77	+0.2
3,063,792	+		PFLU_RS13515	0.77	+0.8
3,063,793	-		PFLU_RS13515	0.77	-1.2
3,063,793	-		PFLU_RS13515	0.77	-1.0
3,063,793	-		PFLU_RS13515	0.77	+2.8
3,063,793	-		PFLU_RS13515	0.77	+0.9
3,063,793	-		PFLU_RS13515	0.77	-4.0
3,063,793	-		PFLU_RS13515	0.77	-2.1
3,063,793	-		PFLU_RS13515	0.77	-0.0
3,063,794	+		PFLU_RS13515	0.77	-2.0
3,063,794	+		PFLU_RS13515	0.77	-0.0
3,063,794	+		PFLU_RS13515	0.77	+2.5
3,063,794	+		PFLU_RS13515	0.77	+0.8
3,063,794	+		PFLU_RS13515	0.77	-0.7
3,063,794	+		PFLU_RS13515	0.77	+0.8
3,063,794	+		PFLU_RS13515	0.77	+2.5
3,063,794	+		PFLU_RS13515	0.77	+0.7
3,063,795	-		PFLU_RS13515	0.77	-0.1
3,063,795	-		PFLU_RS13515	0.77	+2.0
3,063,821	+		PFLU_RS13515	0.81	+0.6
3,063,821	+		PFLU_RS13515	0.81	+1.0
3,063,821	+		PFLU_RS13515	0.81	+0.6
3,063,821	+		PFLU_RS13515	0.81	-0.7
3,063,821	+		PFLU_RS13515	0.81	+1.8
3,063,821	+		PFLU_RS13515	0.81	+0.5
3,063,821	+		PFLU_RS13515	0.81	+0.7
3,063,821	+		PFLU_RS13515	0.81	-0.3
3,063,822	-		PFLU_RS13515	0.81	+1.5
3,063,822	-		PFLU_RS13515	0.81	+0.2
3,063,822	-		PFLU_RS13515	0.81	-1.3
3,063,822	-		PFLU_RS13515	0.81	-2.1
3,063,825	+		PFLU_RS13515	0.82	+0.3
3,063,825	+		PFLU_RS13515	0.82	+1.5
3,063,825	+		PFLU_RS13515	0.82	-1.3
3,063,825	+		PFLU_RS13515	0.82	+1.5
3,063,825	+		PFLU_RS13515	0.82	-0.9
3,063,825	+		PFLU_RS13515	0.82	-1.4
3,063,825	+		PFLU_RS13515	0.82	-0.5
3,063,825	+		PFLU_RS13515	0.82	-2.1
3,063,825	+		PFLU_RS13515	0.82	-0.4
3,063,825	+		PFLU_RS13515	0.82	-2.3
3,063,825	+		PFLU_RS13515	0.82	-0.4
3,063,826	-		PFLU_RS13515	0.82	+1.5
3,063,826	-		PFLU_RS13515	0.82	+0.5
3,063,826	-		PFLU_RS13515	0.82	-2.1
3,063,826	-		PFLU_RS13515	0.82	-0.1
3,063,826	-		PFLU_RS13515	0.82	+0.3
3,063,826	-		PFLU_RS13515	0.82	-0.2
3,063,826	-		PFLU_RS13515	0.82	-0.1
3,063,905	+				+0.6
3,063,905	+				+0.0
3,063,905	+				-2.1
3,063,905	+				-1.1
3,063,905	+				+1.3
3,063,905	+				+0.7
3,063,906	-				+0.9
3,063,906	-				+2.0
3,063,920	+				+0.8
3,063,920	+				-0.1
3,063,920	+				+0.5
3,063,920	+				+0.8
3,063,920	+				+1.3
3,063,920	+				-0.5
3,063,920	+				+0.2
3,063,920	+				+0.4
3,063,921	-				+1.1
3,063,921	-				+2.8
3,063,921	-				-1.1
3,063,921	-				+1.4
3,063,921	-				+1.5
3,063,921	-				-0.9
3,063,921	-				+1.3
3,063,921	-				+0.5
3,063,921	-				+0.5
3,063,921	-				-0.3
3,063,924	-				-1.5
3,064,107	+		PFLU_RS13520	0.31	+0.8
3,064,107	+		PFLU_RS13520	0.31	-1.8
3,064,107	+		PFLU_RS13520	0.31	+1.0
3,064,107	+		PFLU_RS13520	0.31	+1.5
3,064,108	-		PFLU_RS13520	0.31	-1.2
3,064,108	-		PFLU_RS13520	0.31	+0.6
3,064,127	+		PFLU_RS13520	0.34	-1.3
3,064,128	-		PFLU_RS13520	0.34	+0.9
3,064,165	+		PFLU_RS13520	0.40	+0.5
3,064,166	-		PFLU_RS13520	0.40	-1.3
3,064,166	-		PFLU_RS13520	0.40	-1.0
3,064,166	-		PFLU_RS13520	0.40	+0.7
3,064,166	-		PFLU_RS13520	0.40	+1.2
3,064,166	-		PFLU_RS13520	0.40	-0.0
3,064,166	-		PFLU_RS13520	0.40	-0.1
3,064,220	+		PFLU_RS13520	0.49	+0.5
3,064,220	+		PFLU_RS13520	0.49	+0.6
3,064,220	+		PFLU_RS13520	0.49	+1.0
3,064,220	+		PFLU_RS13520	0.49	-1.5
3,064,220	+		PFLU_RS13520	0.49	-2.9
3,064,220	+		PFLU_RS13520	0.49	-1.5
3,064,220	+		PFLU_RS13520	0.49	-3.2
3,064,220	+		PFLU_RS13520	0.49	-0.9
3,064,221	-		PFLU_RS13520	0.50	+0.8
3,064,221	-		PFLU_RS13520	0.50	-1.5
3,064,221	-		PFLU_RS13520	0.50	+0.0
3,064,221	-		PFLU_RS13520	0.50	+1.0
3,064,221	-		PFLU_RS13520	0.50	-0.1
3,064,221	-		PFLU_RS13520	0.50	+0.1
3,064,221	-		PFLU_RS13520	0.50	+1.3
3,064,273	+		PFLU_RS13520	0.58	-1.1
3,064,273	+		PFLU_RS13520	0.58	+1.4
3,064,273	+		PFLU_RS13520	0.58	+2.0
3,064,273	+		PFLU_RS13520	0.58	+1.8
3,064,319	+		PFLU_RS13520	0.66	-1.7
3,064,319	+		PFLU_RS13520	0.66	+1.0
3,064,320	-		PFLU_RS13520	0.66	+0.9
3,064,320	-		PFLU_RS13520	0.66	+0.0
3,064,320	-		PFLU_RS13520	0.66	+0.2
3,064,320	-		PFLU_RS13520	0.66	+1.1
3,064,320	-		PFLU_RS13520	0.66	+1.0
3,064,320	-		PFLU_RS13520	0.66	+0.6
3,064,320	-		PFLU_RS13520	0.66	+2.8
3,064,320	-		PFLU_RS13520	0.66	-2.5
3,064,361	+		PFLU_RS13520	0.73	-0.5
3,064,361	+		PFLU_RS13520	0.73	+0.5
3,064,362	-		PFLU_RS13520	0.73	+0.0
3,064,362	-		PFLU_RS13520	0.73	+0.2
3,064,362	-		PFLU_RS13520	0.73	-1.0
3,064,362	-		PFLU_RS13520	0.73	+1.1
3,064,459	+		PFLU_RS13520	0.89	+1.6
3,064,459	+		PFLU_RS13520	0.89	-2.7
3,064,460	-		PFLU_RS13520	0.89	+1.0
3,064,460	-		PFLU_RS13520	0.89	-2.3
3,064,528	+				+1.5
3,064,528	+				-1.0
3,064,528	+				+0.9
3,064,529	-				+0.7
3,064,530	+				-0.1
3,064,605	+				-2.0
3,064,605	+				+3.5
3,064,605	+				+1.8
3,064,605	+				-1.5
3,064,605	+				+2.0
3,064,606	-				+0.7
3,064,606	-				-1.9
3,064,606	-				+0.3
3,064,606	-				+0.5
3,064,606	-				-0.9
3,064,606	-				+1.9
3,064,606	-				-0.5
3,064,606	-				+1.6
3,064,735	+		PFLU_RS13525	0.23	+1.0
3,064,735	+		PFLU_RS13525	0.23	-2.3
3,064,849	+		PFLU_RS13525	0.42	-3.1
3,064,849	+		PFLU_RS13525	0.42	-0.5
3,064,850	-		PFLU_RS13525	0.43	+0.5
3,064,850	-		PFLU_RS13525	0.43	+1.3
3,064,895	+		PFLU_RS13525	0.50	+1.0
3,064,895	+		PFLU_RS13525	0.50	-0.0
3,064,895	+		PFLU_RS13525	0.50	+1.5
3,064,896	-		PFLU_RS13525	0.50	+0.5
3,064,921	+		PFLU_RS13525	0.55	+1.2
3,064,921	+		PFLU_RS13525	0.55	+1.5
3,064,921	+		PFLU_RS13525	0.55	-0.1
3,064,922	-		PFLU_RS13525	0.55	-0.1
3,065,020	+		PFLU_RS13525	0.71	+0.4
3,065,021	-		PFLU_RS13525	0.71	-0.4
3,065,021	-		PFLU_RS13525	0.71	+0.1
3,065,021	-		PFLU_RS13525	0.71	+0.7
3,065,065	+		PFLU_RS13525	0.79	+0.1
3,065,066	-		PFLU_RS13525	0.79	+0.2
3,065,297	+				-0.8
3,065,297	+				-2.1
3,065,298	-				+1.6
3,065,298	-				+1.5
3,065,303	+				-0.5
3,065,303	+				+1.5
3,065,303	+				+0.5
3,065,303	+				-0.9
3,065,303	+				-0.3
3,065,303	+				+0.3
3,065,303	+				-1.4
3,065,304	-				+0.1
3,065,304	-				+0.9
3,065,304	-				+1.1
3,065,304	-				+0.5
3,065,358	+		PFLU_RS13530	0.20	-0.4
3,065,358	+		PFLU_RS13530	0.20	+0.2
3,065,358	+		PFLU_RS13530	0.20	-1.0
3,065,358	+		PFLU_RS13530	0.20	+0.5
3,065,358	+		PFLU_RS13530	0.20	+0.8
3,065,358	+		PFLU_RS13530	0.20	+1.0
3,065,359	-		PFLU_RS13530	0.20	-1.1
3,065,359	-		PFLU_RS13530	0.20	-1.7
3,065,359	-		PFLU_RS13530	0.20	-3.8
3,065,359	-		PFLU_RS13530	0.20	+0.0
3,065,359	-		PFLU_RS13530	0.20	+0.8
3,065,359	-		PFLU_RS13530	0.20	+0.3
3,065,359	-		PFLU_RS13530	0.20	+0.5
3,065,365	+		PFLU_RS13530	0.23	+0.2
3,065,365	+		PFLU_RS13530	0.23	-0.0
3,065,497	+		PFLU_RS13530	0.73	+1.1
3,065,497	+		PFLU_RS13530	0.73	+0.2
3,065,498	-		PFLU_RS13530	0.73	+0.8
3,065,498	-		PFLU_RS13530	0.73	+1.5
3,065,512	+		PFLU_RS13530	0.78	+1.0
3,065,512	+		PFLU_RS13530	0.78	-1.1
3,065,512	+		PFLU_RS13530	0.78	+0.3
3,065,512	+		PFLU_RS13530	0.78	-0.5
3,065,513	-		PFLU_RS13530	0.79	+0.0
3,065,513	-		PFLU_RS13530	0.79	-0.1
3,065,513	-		PFLU_RS13530	0.79	-0.7
3,065,575	+				+0.6
3,065,575	+				-0.5
3,065,575	+				+1.3
3,065,576	-				-0.5
3,065,576	-				-0.1
3,065,576	-				+1.6
3,065,576	-				-1.1
3,065,576	-				+2.0
3,065,576	-				-0.9
3,065,576	-				+0.1
3,065,579	+				-2.8
3,065,579	+				+0.9
3,065,580	-				-0.5
3,065,580	-				+1.0
3,065,634	+				-1.0
3,065,634	+				+1.6
3,065,635	-				+0.6
3,065,635	-				+0.5
3,065,671	-				-0.5
3,065,695	+		PFLU_RS13535	0.16	-0.3
3,065,816	+		PFLU_RS13535	0.47	-0.2
3,065,816	+		PFLU_RS13535	0.47	+0.5
3,065,816	+		PFLU_RS13535	0.47	+0.9
3,065,816	+		PFLU_RS13535	0.47	-3.0
3,065,816	+		PFLU_RS13535	0.47	-0.6
3,065,816	+		PFLU_RS13535	0.47	-3.1
3,065,816	+		PFLU_RS13535	0.47	+0.6
3,065,816	+		PFLU_RS13535	0.47	-0.2
3,065,816	+		PFLU_RS13535	0.47	+1.3
3,065,816	+		PFLU_RS13535	0.47	+0.4
3,065,816	+		PFLU_RS13535	0.47	-1.5
3,065,817	-		PFLU_RS13535	0.48	+1.5
3,065,817	-		PFLU_RS13535	0.48	+2.5
3,065,817	-		PFLU_RS13535	0.48	-0.4
3,065,817	-		PFLU_RS13535	0.48	+0.9
3,065,817	-		PFLU_RS13535	0.48	+1.0
3,065,817	-		PFLU_RS13535	0.48	+0.0
3,065,817	-		PFLU_RS13535	0.48	+1.7
3,065,838	+		PFLU_RS13535	0.53	-0.4
3,065,838	+		PFLU_RS13535	0.53	+1.5
3,065,838	+		PFLU_RS13535	0.53	+1.2
3,065,838	+		PFLU_RS13535	0.53	+0.8
3,065,838	+		PFLU_RS13535	0.53	-0.6
3,065,838	+		PFLU_RS13535	0.53	+0.3
3,065,839	-		PFLU_RS13535	0.53	+0.8
3,065,839	-		PFLU_RS13535	0.53	-1.6
3,065,839	-		PFLU_RS13535	0.53	+1.1
3,065,839	-		PFLU_RS13535	0.53	+0.3
3,065,839	-		PFLU_RS13535	0.53	+2.0
3,065,839	-		PFLU_RS13535	0.53	-1.1
3,065,839	-		PFLU_RS13535	0.53	+0.0
3,065,839	-		PFLU_RS13535	0.53	+1.2
3,065,839	-		PFLU_RS13535	0.53	+1.8
3,065,987	+				-0.2
3,065,987	+				+0.5
3,065,987	+				-0.1
3,065,987	+				-0.0
3,065,987	+				-0.1
3,065,987	+				+1.0
3,065,987	+				-1.4
3,065,987	+				+0.9
3,065,987	+				+0.5
3,065,987	+				+0.6
3,065,987	+				+2.0
3,065,988	-				-0.4
3,065,988	-				-0.4
3,065,988	-				+0.7
3,065,988	-				+0.7
3,065,988	-				+0.6
3,066,053	+				+0.9
3,066,053	+				-1.5
3,066,053	+				-1.1
3,066,053	+				+0.5
3,066,053	+				-1.5
3,066,053	+				+2.2
3,066,053	+				+0.9
3,066,053	+				+0.5
3,066,053	+				+1.0
3,066,054	-				+1.1
3,066,054	-				+0.8
3,066,054	-				+1.2
3,066,054	-				-0.7
3,066,054	-				+1.6
3,066,054	-				-1.7
3,066,054	-				+1.4
3,066,054	-				-1.2
3,066,056	+				+0.8
3,066,056	+				+2.0
3,066,056	+				-0.3
3,066,056	+				+0.7
3,066,056	+				-0.1
3,066,056	+				+0.5
3,066,056	+				+1.9
3,066,056	+				-1.5
3,066,056	+				-0.2
3,066,056	+				+2.5
3,066,057	-				-1.0
3,066,057	-				-1.2
3,066,057	-				+0.7
3,066,057	-				-0.4
3,066,057	-				-1.9
3,066,057	-				+0.0
3,066,057	-				+0.3
3,066,057	-				+1.0
3,066,057	-				+0.9
3,066,057	-				-0.5
3,066,057	-				-1.0
3,066,057	-				-0.2
3,066,104	+				-0.5
3,066,104	+				-1.5
3,066,104	+				-0.5
3,066,105	-				-1.1