Experiment: H2 deepwell acetate FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04930 and MMP_RS04935 are separated by 92 nucleotides MMP_RS04935 and MMP_RS04940 are separated by 142 nucleotides MMP_RS04940 and MMP_RS04945 are separated by 290 nucleotides
MMP_RS04930: MMP_RS04930 - adenosylcobinamide-phosphate synthase CbiB, at 939,228 to 940,148
_RS04930
MMP_RS04935: MMP_RS04935 - translation initiation factor IF-5A, at 940,241 to 940,636
_RS04935
MMP_RS04940: MMP_RS04940 - precorrin-3B C(17)-methyltransferase, at 940,779 to 941,531
_RS04940
MMP_RS04945: MMP_RS04945 - hypothetical protein, at 941,822 to 942,295
_RS04945
Position (kb) 940
941
942 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 939.814 kb on + strand at 939.846 kb on + strand at 939.892 kb on - strand at 940.128 kb on - strand at 940.129 kb on + strand at 940.131 kb on + strand at 940.135 kb on - strand at 940.146 kb on - strand at 940.147 kb on + strand at 940.185 kb on + strand at 940.214 kb on + strand at 940.214 kb on + strand at 940.229 kb on - strand at 940.229 kb on - strand at 940.296 kb on + strand at 940.587 kb on - strand at 940.600 kb on - strand at 940.671 kb on - strand at 940.676 kb on + strand at 940.695 kb on + strand at 940.696 kb on - strand at 940.697 kb on + strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.699 kb on + strand at 940.704 kb on + strand at 940.704 kb on + strand at 940.737 kb on + strand at 940.737 kb on + strand at 940.742 kb on - strand at 940.746 kb on + strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.750 kb on + strand at 940.750 kb on + strand at 940.751 kb on - strand at 940.751 kb on - strand at 940.751 kb on - strand at 940.752 kb on + strand at 940.752 kb on + strand at 940.752 kb on + strand at 940.754 kb on + strand at 940.762 kb on + strand at 940.769 kb on - strand at 940.787 kb on + strand at 940.796 kb on - strand at 940.796 kb on - strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.798 kb on - strand at 940.798 kb on - strand at 940.820 kb on - strand at 940.839 kb on + strand at 940.865 kb on - strand at 940.886 kb on - strand at 940.897 kb on + strand at 940.901 kb on - strand at 941.003 kb on + strand at 941.188 kb on + strand at 941.188 kb on + strand at 941.188 kb on + strand at 941.223 kb on - strand at 941.290 kb on - strand at 941.290 kb on - strand at 941.290 kb on - strand at 941.291 kb on + strand at 941.292 kb on - strand at 941.292 kb on - strand at 941.292 kb on - strand at 941.293 kb on + strand at 941.293 kb on + strand at 941.293 kb on + strand at 941.293 kb on + strand at 941.293 kb on + strand at 941.293 kb on + strand at 941.346 kb on - strand at 941.376 kb on + strand at 941.419 kb on - strand at 941.420 kb on + strand at 941.448 kb on - strand at 941.457 kb on + strand at 941.524 kb on - strand at 941.524 kb on - strand at 941.524 kb on - strand at 941.554 kb on - strand at 941.580 kb on - strand at 941.584 kb on - strand at 941.590 kb on - strand at 941.591 kb on + strand at 941.591 kb on + strand at 941.591 kb on + strand at 941.592 kb on - strand at 941.593 kb on + strand at 941.598 kb on - strand at 941.598 kb on - strand at 941.599 kb on + strand at 941.606 kb on + strand at 941.618 kb on - strand at 941.619 kb on + strand at 941.619 kb on + strand at 941.662 kb on + strand at 941.686 kb on - strand at 941.687 kb on + strand at 941.687 kb on + strand at 941.694 kb on - strand at 941.695 kb on + strand at 941.697 kb on - strand at 941.697 kb on - strand at 941.705 kb on - strand at 941.724 kb on - strand at 941.741 kb on - strand at 941.742 kb on + strand at 941.744 kb on - strand at 941.745 kb on + strand at 941.745 kb on + strand at 941.745 kb on + strand at 941.745 kb on + strand at 941.748 kb on + strand at 941.748 kb on + strand at 941.757 kb on - strand at 941.757 kb on - strand at 941.758 kb on + strand at 941.759 kb on - strand at 941.759 kb on - strand at 941.759 kb on - strand at 941.772 kb on - strand at 941.772 kb on - strand at 941.773 kb on + strand at 941.773 kb on + strand at 941.773 kb on + strand at 941.773 kb on + strand at 941.774 kb on - strand at 941.775 kb on + strand at 941.777 kb on + strand at 941.835 kb on + strand at 941.881 kb on - strand, within MMP_RS04945 at 941.885 kb on - strand, within MMP_RS04945 at 942.062 kb on - strand, within MMP_RS04945 at 942.071 kb on - strand, within MMP_RS04945 at 942.172 kb on + strand, within MMP_RS04945 at 942.186 kb on - strand, within MMP_RS04945 at 942.276 kb on + strand at 942.325 kb on - strand at 942.335 kb on - strand at 942.340 kb on + strand at 942.340 kb on + strand at 942.343 kb on + strand at 942.352 kb on + strand at 942.360 kb on - strand at 942.360 kb on - strand at 942.364 kb on - strand at 942.365 kb on + strand at 942.368 kb on + strand at 942.368 kb on + strand at 942.368 kb on + strand at 942.368 kb on + strand at 942.377 kb on + strand at 942.377 kb on + strand at 942.380 kb on - strand at 942.380 kb on - strand at 942.381 kb on + strand at 942.381 kb on + strand at 942.382 kb on - strand at 942.383 kb on + strand at 942.398 kb on - strand at 942.399 kb on + strand at 942.403 kb on + strand at 942.408 kb on + strand at 942.409 kb on - strand at 942.432 kb on - strand at 942.432 kb on - strand at 942.445 kb on + strand at 942.451 kb on - strand at 942.456 kb on - strand at 942.458 kb on - strand at 942.458 kb on - strand at 942.459 kb on + strand at 942.459 kb on + strand at 942.459 kb on + strand at 942.460 kb on - strand at 942.461 kb on + strand at 942.470 kb on + strand at 942.491 kb on - strand at 942.492 kb on + strand at 942.492 kb on + strand at 942.496 kb on + strand at 942.500 kb on + strand at 942.502 kb on + strand at 942.504 kb on - strand at 942.504 kb on - strand at 942.504 kb on - strand at 942.505 kb on + strand at 942.505 kb on + strand at 942.505 kb on + strand at 942.505 kb on + strand at 942.510 kb on + strand at 942.514 kb on - strand at 942.520 kb on + strand at 942.520 kb on + strand at 942.521 kb on - strand at 942.522 kb on + strand at 942.522 kb on + strand at 942.525 kb on - strand at 942.526 kb on + strand at 942.526 kb on + strand at 942.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate FREE remove 939,814 + -4.0 939,846 + -4.7 939,892 - -2.7 940,128 - -2.6 940,129 + -5.1 940,131 + -2.8 940,135 - -4.3 940,146 - -1.7 940,147 + -0.3 940,185 + +0.5 940,214 + -0.0 940,214 + +0.8 940,229 - -2.3 940,229 - -0.6 940,296 + -4.0 940,587 - -1.2 940,600 - -5.3 940,671 - -2.8 940,676 + -2.6 940,695 + -3.7 940,696 - -2.5 940,697 + -3.2 940,698 - -3.3 940,698 - -3.4 940,698 - -1.3 940,698 - -5.6 940,699 + -3.9 940,704 + -2.6 940,704 + -2.0 940,737 + -3.2 940,737 + -3.9 940,742 - -4.3 940,746 + -1.3 940,747 - -3.2 940,747 - -3.6 940,747 - -2.1 940,747 - -4.4 940,747 - -3.2 940,748 + -4.1 940,748 + -3.4 940,748 + -2.1 940,748 + -3.0 940,749 - -2.9 940,749 - -0.2 940,749 - -2.4 940,749 - -3.9 940,749 - -2.7 940,749 - -2.8 940,750 + -3.2 940,750 + -3.1 940,751 - -1.0 940,751 - -1.0 940,751 - -2.4 940,752 + -0.2 940,752 + -0.1 940,752 + -4.3 940,754 + +0.2 940,762 + +0.1 940,769 - +0.4 940,787 + -0.7 940,796 - +0.3 940,796 - -1.0 940,797 + -0.7 940,797 + -1.2 940,797 + +0.6 940,797 + -0.2 940,798 - -2.8 940,798 - -5.2 940,820 - -3.3 940,839 + -5.2 940,865 - -3.4 940,886 - -4.4 940,897 + -3.9 940,901 - -3.5 941,003 + -2.9 941,188 + -3.6 941,188 + -4.6 941,188 + -2.6 941,223 - -3.0 941,290 - -5.2 941,290 - -4.5 941,290 - -4.2 941,291 + -4.0 941,292 - -4.4 941,292 - -1.6 941,292 - -3.9 941,293 + -2.9 941,293 + -2.1 941,293 + -5.0 941,293 + -4.0 941,293 + -3.3 941,293 + -3.3 941,346 - -2.9 941,376 + -5.0 941,419 - -5.0 941,420 + -4.5 941,448 - -4.2 941,457 + -3.1 941,524 - -3.6 941,524 - -3.4 941,524 - -5.1 941,554 - -3.5 941,580 - -3.9 941,584 - -5.2 941,590 - -2.9 941,591 + -4.3 941,591 + -3.3 941,591 + -2.5 941,592 - -4.5 941,593 + -4.8 941,598 - +0.6 941,598 - -1.4 941,599 + -2.9 941,606 + -1.4 941,618 - -1.2 941,619 + +0.1 941,619 + +0.1 941,662 + -1.4 941,686 - -1.1 941,687 + -0.2 941,687 + -1.3 941,694 - +0.9 941,695 + -1.7 941,697 - -2.6 941,697 - +0.8 941,705 - -2.1 941,724 - +1.1 941,741 - -0.5 941,742 + -1.1 941,744 - +0.1 941,745 + -1.4 941,745 + +0.1 941,745 + -1.3 941,745 + -0.2 941,748 + -0.6 941,748 + -1.4 941,757 - +1.3 941,757 - +0.3 941,758 + -1.6 941,759 - -0.5 941,759 - +0.6 941,759 - +1.6 941,772 - -1.2 941,772 - +0.8 941,773 + -0.4 941,773 + -0.8 941,773 + -0.5 941,773 + -1.7 941,774 - -1.4 941,775 + -0.9 941,777 + -0.1 941,835 + +2.2 941,881 - MMP_RS04945 0.12 +0.3 941,885 - MMP_RS04945 0.13 +2.8 942,062 - MMP_RS04945 0.51 +1.5 942,071 - MMP_RS04945 0.53 +1.1 942,172 + MMP_RS04945 0.74 +0.9 942,186 - MMP_RS04945 0.77 +1.4 942,276 + -0.2 942,325 - -0.1 942,335 - +0.2 942,340 + -0.8 942,340 + +0.6 942,343 + -1.1 942,352 + +1.0 942,360 - +1.1 942,360 - +0.7 942,364 - -0.2 942,365 + -0.7 942,368 + +0.4 942,368 + +0.1 942,368 + -0.2 942,368 + +1.9 942,377 + -0.1 942,377 + +0.6 942,380 - +1.2 942,380 - -0.3 942,381 + +0.5 942,381 + +0.0 942,382 - +0.1 942,383 + +1.2 942,398 - -1.0 942,399 + -0.5 942,403 + +0.2 942,408 + +0.4 942,409 - +1.3 942,432 - -0.4 942,432 - +0.4 942,445 + -0.2 942,451 - +0.3 942,456 - +1.4 942,458 - -1.1 942,458 - +0.5 942,459 + +1.5 942,459 + +0.1 942,459 + -0.2 942,460 - -0.0 942,461 + -0.3 942,470 + +0.6 942,491 - +1.0 942,492 + +0.3 942,492 + +1.2 942,496 + +1.2 942,500 + -0.9 942,502 + -0.4 942,504 - +0.6 942,504 - -0.6 942,504 - -0.4 942,505 + +0.8 942,505 + -0.0 942,505 + -0.0 942,505 + +0.4 942,510 + -0.1 942,514 - +0.5 942,520 + +0.4 942,520 + +0.8 942,521 - +0.8 942,522 + +0.1 942,522 + +0.3 942,525 - +2.2 942,526 + +0.9 942,526 + -0.4 942,526 + +1.6
Or see this region's nucleotide sequence