Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09795

Experiment: R2A with Calcium chloride 125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 125 mM
2,136,832	+		LRK54_RS09785	0.71	+1.5
2,136,833	-		LRK54_RS09785	0.72	+0.7
2,136,925	+		LRK54_RS09785	0.85	-1.9
2,136,925	+		LRK54_RS09785	0.85	-0.1
2,136,925	+		LRK54_RS09785	0.85	-0.3
2,136,925	+		LRK54_RS09785	0.85	-1.8
2,136,925	+		LRK54_RS09785	0.85	-0.2
2,136,926	-		LRK54_RS09785	0.85	-1.3
2,136,926	-		LRK54_RS09785	0.85	+1.0
2,136,926	-		LRK54_RS09785	0.85	+0.5
2,136,955	+		LRK54_RS09785	0.89	+1.3
2,136,955	+		LRK54_RS09785	0.89	+0.0
2,136,955	+		LRK54_RS09785	0.89	-2.5
2,136,955	+		LRK54_RS09785	0.89	+0.7
2,136,955	+		LRK54_RS09785	0.89	+0.2
2,136,955	+		LRK54_RS09785	0.89	-1.2
2,136,955	+		LRK54_RS09785	0.89	+0.5
2,136,955	+		LRK54_RS09785	0.89	+0.1
2,136,955	+		LRK54_RS09785	0.89	-0.2
2,136,955	+		LRK54_RS09785	0.89	-0.6
2,136,956	-		LRK54_RS09785	0.89	+0.7
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	+0.7
2,136,956	-		LRK54_RS09785	0.89	+0.4
2,136,956	-		LRK54_RS09785	0.89	-0.5
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	-2.1
2,136,956	-		LRK54_RS09785	0.89	+0.5
2,136,956	-		LRK54_RS09785	0.89	-0.2
2,136,956	-		LRK54_RS09785	0.89	-0.1
2,136,956	-		LRK54_RS09785	0.89	-1.5
2,136,956	-		LRK54_RS09785	0.89	+0.2
2,136,956	-		LRK54_RS09785	0.89	-0.3
2,136,956	-		LRK54_RS09785	0.89	+0.6
2,136,956	-		LRK54_RS09785	0.89	+0.1
2,136,956	-		LRK54_RS09785	0.89	+1.2
2,137,095	+				-0.8
2,137,095	+				-0.4
2,137,095	+				+0.9
2,137,095	+				-0.4
2,137,095	+				-2.2
2,137,096	-				+0.7
2,137,096	-				-0.8
2,137,096	-				-2.3
2,137,096	-				+1.0
2,137,096	-				+1.7
2,137,274	+		LRK54_RS09790	0.37	-1.4
2,137,274	+		LRK54_RS09790	0.37	+1.6
2,137,274	+		LRK54_RS09790	0.37	-0.5
2,137,274	+		LRK54_RS09790	0.37	+1.1
2,137,274	+		LRK54_RS09790	0.37	+0.1
2,137,275	-		LRK54_RS09790	0.37	-0.5
2,137,275	-		LRK54_RS09790	0.37	+1.3
2,137,275	-		LRK54_RS09790	0.37	-0.2
2,137,275	-		LRK54_RS09790	0.37	+0.4
2,137,275	-		LRK54_RS09790	0.37	+1.0
2,137,275	-		LRK54_RS09790	0.37	-0.5
2,137,275	-		LRK54_RS09790	0.37	-0.1
2,137,275	-		LRK54_RS09790	0.37	+0.4
2,137,275	-		LRK54_RS09790	0.37	-1.5
2,137,275	-		LRK54_RS09790	0.37	+1.9
2,137,275	-		LRK54_RS09790	0.37	+0.4
2,137,335	+		LRK54_RS09790	0.50	-0.6
2,137,336	-		LRK54_RS09790	0.51	-0.1
2,137,336	-		LRK54_RS09790	0.51	-1.5
2,137,386	+		LRK54_RS09790	0.62	+1.5
2,137,386	+		LRK54_RS09790	0.62	-1.6
2,137,386	+		LRK54_RS09790	0.62	-1.1
2,137,386	+		LRK54_RS09790	0.62	-0.6
2,137,387	-		LRK54_RS09790	0.62	-1.4
2,137,387	-		LRK54_RS09790	0.62	+0.7
2,137,387	-		LRK54_RS09790	0.62	+0.0
2,137,387	-		LRK54_RS09790	0.62	+1.5
2,137,410	+		LRK54_RS09790	0.67	+0.0
2,137,410	+		LRK54_RS09790	0.67	-0.1
2,137,410	+		LRK54_RS09790	0.67	+0.8
2,137,410	+		LRK54_RS09790	0.67	+0.2
2,137,410	+		LRK54_RS09790	0.67	-0.3
2,137,410	+		LRK54_RS09790	0.67	-2.3
2,137,410	+		LRK54_RS09790	0.67	-1.6
2,137,410	+		LRK54_RS09790	0.67	+0.2
2,137,410	+		LRK54_RS09790	0.67	+2.1
2,137,410	+		LRK54_RS09790	0.67	+0.7
2,137,410	+		LRK54_RS09790	0.67	-1.8
2,137,410	+		LRK54_RS09790	0.67	+1.2
2,137,410	+		LRK54_RS09790	0.67	+0.2
2,137,411	-		LRK54_RS09790	0.68	+0.5
2,137,411	-		LRK54_RS09790	0.68	+0.6
2,137,411	-		LRK54_RS09790	0.68	-0.1
2,137,411	-		LRK54_RS09790	0.68	-0.9
2,137,411	-		LRK54_RS09790	0.68	+0.9
2,137,411	-		LRK54_RS09790	0.68	-0.3
2,137,411	-		LRK54_RS09790	0.68	+1.3
2,137,411	-		LRK54_RS09790	0.68	-3.1
2,137,411	-		LRK54_RS09790	0.68	+0.7
2,137,411	-		LRK54_RS09790	0.68	+0.6
2,137,411	-		LRK54_RS09790	0.68	-0.4
2,137,411	-		LRK54_RS09790	0.68	-1.5
2,137,411	-		LRK54_RS09790	0.68	+0.3
2,137,411	-		LRK54_RS09790	0.68	-0.1
2,137,411	-		LRK54_RS09790	0.68	-0.1
2,137,411	-		LRK54_RS09790	0.68	-0.1
2,137,411	-		LRK54_RS09790	0.68	-1.1
2,137,411	-		LRK54_RS09790	0.68	+0.0
2,137,411	-		LRK54_RS09790	0.68	-0.5
2,137,411	-		LRK54_RS09790	0.68	-1.6
2,137,411	-		LRK54_RS09790	0.68	+0.6
2,137,411	-		LRK54_RS09790	0.68	+0.2
2,137,411	-		LRK54_RS09790	0.68	-0.5
2,137,445	+		LRK54_RS09790	0.75	-0.2
2,137,445	+		LRK54_RS09790	0.75	+2.0
2,137,445	+		LRK54_RS09790	0.75	-1.3
2,137,445	+		LRK54_RS09790	0.75	+1.0
2,137,446	-		LRK54_RS09790	0.76	-0.4
2,137,446	-		LRK54_RS09790	0.76	+1.2
2,137,446	-		LRK54_RS09790	0.76	+0.4
2,137,446	-		LRK54_RS09790	0.76	-1.0
2,137,452	+		LRK54_RS09790	0.77	-1.1
2,137,452	+		LRK54_RS09790	0.77	-2.0
2,137,452	+		LRK54_RS09790	0.77	+0.0
2,137,452	+		LRK54_RS09790	0.77	+0.1
2,137,452	+		LRK54_RS09790	0.77	-0.6
2,137,452	+		LRK54_RS09790	0.77	+0.5
2,137,452	+		LRK54_RS09790	0.77	-2.8
2,137,452	+		LRK54_RS09790	0.77	-1.0
2,137,452	+		LRK54_RS09790	0.77	-0.0
2,137,452	+		LRK54_RS09790	0.77	+0.5
2,137,452	+		LRK54_RS09790	0.77	-0.6
2,137,452	+		LRK54_RS09790	0.77	+0.4
2,137,452	+		LRK54_RS09790	0.77	-0.5
2,137,452	+		LRK54_RS09790	0.77	+0.3
2,137,452	+		LRK54_RS09790	0.77	+0.9
2,137,452	+		LRK54_RS09790	0.77	+0.1
2,137,452	+		LRK54_RS09790	0.77	+0.5
2,137,452	+		LRK54_RS09790	0.77	-1.0
2,137,452	+		LRK54_RS09790	0.77	-0.4
2,137,452	+		LRK54_RS09790	0.77	-1.0
2,137,452	+		LRK54_RS09790	0.77	-0.1
2,137,452	+		LRK54_RS09790	0.77	-0.5
2,137,452	+		LRK54_RS09790	0.77	-0.6
2,137,452	+		LRK54_RS09790	0.77	-0.5
2,137,452	+		LRK54_RS09790	0.77	+0.3
2,137,452	+		LRK54_RS09790	0.77	+0.8
2,137,452	+		LRK54_RS09790	0.77	+0.8
2,137,452	+		LRK54_RS09790	0.77	+0.5
2,137,452	+		LRK54_RS09790	0.77	-0.1
2,137,452	+		LRK54_RS09790	0.77	+0.3
2,137,452	+		LRK54_RS09790	0.77	-0.4
2,137,452	+		LRK54_RS09790	0.77	-1.3
2,137,452	+		LRK54_RS09790	0.77	+1.5
2,137,452	+		LRK54_RS09790	0.77	-2.3
2,137,453	-		LRK54_RS09790	0.77	+0.5
2,137,453	-		LRK54_RS09790	0.77	+0.6
2,137,453	-		LRK54_RS09790	0.77	+0.4
2,137,453	-		LRK54_RS09790	0.77	-0.5
2,137,453	-		LRK54_RS09790	0.77	-1.9
2,137,453	-		LRK54_RS09790	0.77	+0.1
2,137,453	-		LRK54_RS09790	0.77	+0.2
2,137,453	-		LRK54_RS09790	0.77	+1.8
2,137,453	-		LRK54_RS09790	0.77	+0.4
2,137,453	-		LRK54_RS09790	0.77	-0.5
2,137,453	-		LRK54_RS09790	0.77	+1.1
2,137,453	-		LRK54_RS09790	0.77	+0.7
2,137,453	-		LRK54_RS09790	0.77	-0.1
2,137,453	-		LRK54_RS09790	0.77	-0.1
2,137,453	-		LRK54_RS09790	0.77	+0.9
2,137,453	-		LRK54_RS09790	0.77	+1.2
2,137,453	-		LRK54_RS09790	0.77	+2.3
2,137,453	-		LRK54_RS09790	0.77	+1.2
2,137,453	-		LRK54_RS09790	0.77	-0.0
2,137,453	-		LRK54_RS09790	0.77	+1.0
2,137,453	-		LRK54_RS09790	0.77	+1.0
2,137,453	-		LRK54_RS09790	0.77	-0.6
2,137,453	-		LRK54_RS09790	0.77	-0.9
2,137,453	-		LRK54_RS09790	0.77	+0.1
2,137,453	-		LRK54_RS09790	0.77	+2.0
2,137,453	-		LRK54_RS09790	0.77	-0.7
2,137,453	-		LRK54_RS09790	0.77	+0.5
2,137,453	-		LRK54_RS09790	0.77	+1.3
2,137,453	-		LRK54_RS09790	0.77	-0.8
2,137,453	-		LRK54_RS09790	0.77	+0.2
2,137,453	-		LRK54_RS09790	0.77	+1.0
2,137,453	-		LRK54_RS09790	0.77	+1.5
2,137,470	+		LRK54_RS09790	0.81	-0.8
2,137,470	+		LRK54_RS09790	0.81	+0.5
2,137,470	+		LRK54_RS09790	0.81	+0.1
2,137,470	+		LRK54_RS09790	0.81	-1.5
2,137,471	-		LRK54_RS09790	0.81	+0.2
2,137,471	-		LRK54_RS09790	0.81	+0.5
2,137,471	-		LRK54_RS09790	0.81	-1.0
2,137,471	-		LRK54_RS09790	0.81	+0.4
2,137,471	-		LRK54_RS09790	0.81	+0.5
2,137,471	-		LRK54_RS09790	0.81	-0.1
2,137,643	+				+1.5
2,137,643	+				+0.5
2,137,643	+				+0.2
2,137,643	+				-1.6
2,137,643	+				+1.6
2,137,643	+				-0.3
2,137,643	+				-2.1
2,137,643	+				-2.5
2,137,643	+				+0.9
2,137,643	+				+0.7
2,137,643	+				+2.5
2,137,643	+				+0.1
2,137,643	+				-1.5
2,137,643	+				-0.4
2,137,643	+				-1.6
2,137,643	+				-1.9
2,137,644	-				+0.9
2,137,644	-				+0.7
2,137,644	-				-0.4
2,137,644	-				-0.8
2,137,644	-				+1.2
2,137,644	-				-1.1
2,137,644	-				-0.5
2,137,644	-				+0.5
2,137,644	-				+0.8
2,137,644	-				-1.6
2,137,644	-				+0.3
2,137,644	-				-1.5
2,137,644	-				-1.5
2,137,644	-				-0.1
2,138,192	+		LRK54_RS09795	0.56	-0.1
2,138,381	+		LRK54_RS09795	0.77	+1.5
2,138,418	-		LRK54_RS09795	0.81	+1.5
2,138,553	-				+1.5
2,138,588	+				+1.0
2,138,588	+				-1.1
2,138,588	+				-2.4
2,138,588	+				-2.8
2,138,588	+				+0.7
2,138,589	-				-0.6
2,138,589	-				-0.6
2,138,589	-				+0.1
2,138,589	-				-1.6
2,138,589	-				-0.1
2,138,589	-				-0.3
2,138,589	-				-0.3
2,138,589	-				-0.7
2,138,589	-				-0.4
2,138,589	-				-1.0
2,138,589	-				+0.5
2,138,589	-				-1.9
2,138,589	-				-1.4
2,138,589	-				+0.6
2,138,589	-				-1.6
2,138,589	-				+1.5
2,138,668	+				-0.8
2,138,668	+				+0.2
2,138,668	+				+1.0
2,138,668	+				-0.3
2,138,668	+				-0.3
2,138,668	+				-0.1
2,138,668	+				-0.3
2,138,668	+				-2.2
2,138,668	+				+0.4
2,138,668	+				-0.8
2,138,668	+				-1.5
2,138,668	+				+0.7
2,138,668	+				-0.6
2,138,668	+				+0.3
2,138,668	+				-1.6
2,138,668	+				-0.1
2,138,668	+				+1.8
2,138,668	+				-0.6
2,138,668	+				-2.7
2,138,668	+				-0.5
2,138,668	+				+0.1
2,138,668	+				+0.0
2,138,668	+				-0.1
2,138,668	+				-0.6
2,138,668	+				+1.7
2,138,668	+				-1.1
2,138,668	+				-0.9
2,138,668	+				+0.3
2,138,669	-				-0.9
2,138,672	+				-0.1
2,138,672	+				+1.1
2,138,672	+				+0.6
2,138,672	+				-1.1
2,138,672	+				+0.8
2,138,672	+				+0.5
2,138,672	+				+0.6
2,138,672	+				-0.5
2,138,672	+				-1.6
2,138,672	+				+0.4
2,138,672	+				-0.3
2,138,672	+				+0.3
2,138,672	+				+0.4
2,138,672	+				-0.5
2,138,672	+				-0.9
2,138,672	+				+0.9
2,138,672	+				-0.7
2,138,672	+				+0.9
2,138,672	+				-1.0
2,138,672	+				-0.3
2,138,672	+				+1.0
2,138,672	+				-1.8
2,138,672	+				+0.4
2,138,672	+				-0.3
2,138,672	+				+0.3
2,138,672	+				+0.7
2,138,672	+				+0.1
2,138,672	+				-0.7
2,138,672	+				-0.1
2,138,672	+				-2.5
2,138,672	+				-0.0
2,138,672	+				-0.9
2,138,672	+				+0.5
2,138,672	+				-0.3
2,138,672	+				-1.2
2,138,672	+				+1.8
2,138,672	+				+0.1
2,138,672	+				+0.7
2,138,672	+				-0.7
2,138,672	+				+0.6
2,138,672	+				+0.5
2,138,672	+				+0.9
2,138,672	+				+0.5
2,138,672	+				-1.4
2,138,672	+				+1.5
2,138,672	+				-1.8
2,138,672	+				+0.7
2,138,672	+				-1.2
2,138,672	+				+0.6
2,138,672	+				+1.7
2,138,672	+				+0.5
2,138,672	+				+0.7
2,138,672	+				+0.2
2,138,673	-				+1.0
2,138,680	+				-0.6
2,139,381	+				+0.2
2,139,381	+				-0.0
2,139,381	+				-0.5
2,139,381	+				+1.5
2,139,381	+				-1.1
2,139,382	-				-0.1
2,139,382	-				-0.8
2,139,382	-				-0.3
2,139,382	-				+0.3
2,139,382	-				-0.3
2,139,382	-				+0.3
2,139,382	-				-0.4
2,139,382	-				+0.7
2,139,382	-				-1.3
2,139,383	+				-0.0
2,139,383	+				+0.3
2,139,383	+				-0.4
2,139,383	+				-0.2
2,139,383	+				+1.2
2,139,383	+				+0.2
2,139,383	+				-0.1
2,139,383	+				-1.6
2,139,383	+				-0.2
2,139,383	+				+1.9
2,139,383	+				+1.2
2,139,383	+				+0.3
2,139,383	+				+1.5
2,139,383	+				+2.8
2,139,383	+				+0.5
2,139,383	+				-0.5
2,139,383	+				+0.1
2,139,383	+				-0.5
2,139,383	+				+0.9
2,139,383	+				+1.1
2,139,383	+				-1.2
2,139,383	+				-0.9
2,139,383	+				+0.2
2,139,383	+				-1.1
2,139,383	+				+0.9
2,139,383	+				-0.8
2,139,383	+				-0.5
2,139,383	+				+0.6
2,139,383	+				+0.5
2,139,383	+				-1.8
2,139,383	+				-1.6
2,139,383	+				-1.3
2,139,383	+				-0.9
2,139,383	+				-0.9
2,139,383	+				-0.4
2,139,383	+				+1.5
2,139,383	+				-0.5
2,139,383	+				+0.1
2,139,383	+				-0.3
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