Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03729

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
3,896,174	+		CCNA_03727	0.52	-1.9
3,896,182	-		CCNA_03727	0.53	+1.4
3,896,198	-		CCNA_03727	0.55	+0.4
3,896,202	+		CCNA_03727	0.55	-0.6
3,896,202	+		CCNA_03727	0.55	-2.4
3,896,210	-		CCNA_03727	0.56	+0.4
3,896,212	-		CCNA_03727	0.56	+0.2
3,896,225	+		CCNA_03727	0.58	+0.4
3,896,225	-		CCNA_03727	0.58	-0.6
3,896,233	-		CCNA_03727	0.58	-1.1
3,896,235	-		CCNA_03727	0.59	-1.3
3,896,235	-		CCNA_03727	0.59	-2.3
3,896,256	-		CCNA_03727	0.61	-0.6
3,896,261	+		CCNA_03727	0.61	-2.6
3,896,261	+		CCNA_03727	0.61	-1.4
3,896,261	+		CCNA_03727	0.61	-2.8
3,896,261	+		CCNA_03727	0.61	-2.0
3,896,261	+		CCNA_03727	0.61	-0.4
3,896,261	+		CCNA_03727	0.61	+2.8
3,896,261	+		CCNA_03727	0.61	+0.4
3,896,269	-		CCNA_03727	0.62	-1.7
3,896,269	-		CCNA_03727	0.62	+0.1
3,896,269	-		CCNA_03727	0.62	-0.1
3,896,269	-		CCNA_03727	0.62	-2.0
3,896,269	-		CCNA_03727	0.62	-1.4
3,896,295	+		CCNA_03727	0.65	-1.7
3,896,297	+		CCNA_03727	0.65	-1.7
3,896,297	+		CCNA_03727	0.65	-0.4
3,896,297	+		CCNA_03727	0.65	-1.5
3,896,297	+		CCNA_03727	0.65	-1.5
3,896,297	+		CCNA_03727	0.65	-2.4
3,896,305	-		CCNA_03727	0.66	-1.1
3,896,305	-		CCNA_03727	0.66	-1.4
3,896,305	-		CCNA_03727	0.66	-0.7
3,896,358	-		CCNA_03727	0.71	-0.1
3,896,378	+		CCNA_03727	0.73	-1.6
3,896,386	+		CCNA_03727	0.74	-2.3
3,896,386	-		CCNA_03727	0.74	-2.7
3,896,392	-		CCNA_03727	0.75	-0.1
3,896,393	-		CCNA_03727	0.75	-1.0
3,896,413	+		CCNA_03727	0.77	+0.3
3,896,416	-		CCNA_03727	0.77	-0.8
3,896,416	-		CCNA_03727	0.77	-0.5
3,896,438	+		CCNA_03727	0.79	-3.9
3,896,438	+		CCNA_03727	0.79	-1.4
3,896,438	+		CCNA_03727	0.79	-1.0
3,896,438	+		CCNA_03727	0.79	-0.7
3,896,446	-		CCNA_03727	0.80	-2.6
3,896,446	-		CCNA_03727	0.80	-2.8
3,896,446	-		CCNA_03727	0.80	-1.1
3,896,446	-		CCNA_03727	0.80	-2.5
3,896,451	-		CCNA_03727	0.81	-1.5
3,896,451	-		CCNA_03727	0.81	-1.5
3,896,491	+		CCNA_03727	0.85	+0.2
3,896,553	-				-1.1
3,896,564	+				-0.1
3,896,564	+				+0.2
3,896,570	-				+2.4
3,896,570	-				-2.1
3,896,570	-				+0.1
3,896,582	+				-2.6
3,896,582	+				-0.9
3,896,582	+				-0.2
3,896,582	+				+1.4
3,896,582	+				-0.4
3,896,587	+				+0.1
3,896,590	-				+0.4
3,896,590	-				+0.1
3,896,590	-				-1.7
3,896,590	-				-0.6
3,896,590	-				-1.6
3,896,590	-				-0.4
3,896,590	-				-1.2
3,896,595	-				-1.9
3,896,607	-				-0.4
3,896,612	+				-1.5
3,896,659	+				+0.7
3,896,667	-				+0.3
3,896,718	+				-0.3
3,896,772	+				-0.1
3,896,780	-				+0.5
3,896,792	+		CCNA_03728	0.13	+0.1
3,896,792	+		CCNA_03728	0.13	-0.4
3,896,792	+		CCNA_03728	0.13	-2.9
3,896,800	-		CCNA_03728	0.16	-0.1
3,896,800	-		CCNA_03728	0.16	-0.4
3,896,836	-		CCNA_03728	0.30	+0.6
3,896,838	-		CCNA_03728	0.31	+1.0
3,896,838	-		CCNA_03728	0.31	-0.1
3,896,838	-		CCNA_03728	0.31	-0.1
3,896,838	-		CCNA_03728	0.31	+0.0
3,896,862	+		CCNA_03728	0.41	-1.4
3,896,880	-		CCNA_03728	0.48	+0.6
3,896,896	+		CCNA_03728	0.55	-0.5
3,896,904	-		CCNA_03728	0.58	+0.3
3,897,003	+				-1.2
3,897,008	+				+0.5
3,897,017	-				+0.5
3,897,017	-				+1.1
3,897,033	+				-1.6
3,897,033	+				-0.4
3,897,033	+				+1.8
3,897,033	+				-0.7
3,897,041	-				+0.8
3,897,041	-				-0.3
3,897,041	-				+0.4
3,897,041	-				+0.9
3,897,041	-				-0.7
3,897,041	-				+0.4
3,897,041	-				+0.4
3,897,041	-				+0.4
3,897,050	-				+0.8
3,897,107	-				+0.1
3,897,123	+				-0.1
3,897,186	-				+1.6
3,897,244	-		CCNA_03729	0.15	+0.4
3,897,288	-		CCNA_03729	0.22	-0.1
3,897,288	-		CCNA_03729	0.22	+0.6
3,897,289	-				+1.4
3,897,371	+		CCNA_03729	0.35	+0.4
3,897,579	-		CCNA_03729	0.67	+0.4
3,897,581	+		CCNA_03729	0.67	+1.4
3,897,590	-		CCNA_03729	0.68	-0.9
3,897,644	-		CCNA_03729	0.76	+0.4
3,897,721	-		CCNA_03729	0.88	-0.9
3,897,797	-				+1.1
3,897,797	-				+0.2
3,897,907	-				-2.6
3,897,915	-				+0.1
3,897,925	-				-0.5
3,897,933	-				-0.4
3,897,953	-				-0.6
3,897,962	+		CCNA_03730	0.10	+0.4
3,898,003	+		CCNA_03730	0.15	-1.1
3,898,017	+		CCNA_03730	0.17	+1.9
3,898,036	+		CCNA_03730	0.19	-1.1
3,898,036	+		CCNA_03730	0.19	-2.1
3,898,062	-		CCNA_03730	0.22	+1.6
3,898,074	-		CCNA_03730	0.23	-0.1
3,898,095	+		CCNA_03730	0.26	-1.9
3,898,125	+		CCNA_03730	0.29	-1.7
3,898,164	-		CCNA_03730	0.33	-0.6
3,898,166	+		CCNA_03730	0.34	-0.1
3,898,221	-		CCNA_03730	0.40	-1.0
3,898,236	-		CCNA_03730	0.41	+0.9
3,898,236	-		CCNA_03730	0.41	-2.0
3,898,317	-		CCNA_03730	0.51	+0.4
3,898,330	+		CCNA_03730	0.52	-1.1
3,898,330	+		CCNA_03730	0.52	-1.3
3,898,330	+		CCNA_03730	0.52	+0.2
3,898,330	+		CCNA_03730	0.52	+0.0
3,898,330	+		CCNA_03730	0.52	+0.1
3,898,330	+		CCNA_03730	0.52	+0.0
3,898,330	+		CCNA_03730	0.52	-2.1
3,898,330	+		CCNA_03730	0.52	-0.6
3,898,330	-		CCNA_03730	0.52	-0.4
3,898,338	-		CCNA_03730	0.53	-1.0
3,898,338	-		CCNA_03730	0.53	+0.2
3,898,338	-		CCNA_03730	0.53	+0.9
3,898,338	-		CCNA_03730	0.53	+0.9
3,898,338	-		CCNA_03730	0.53	-1.1
3,898,338	-		CCNA_03730	0.53	-0.5
3,898,338	-		CCNA_03730	0.53	+0.4
3,898,338	-		CCNA_03730	0.53	-2.3
3,898,338	-		CCNA_03730	0.53	-0.5
3,898,338	-		CCNA_03730	0.53	-0.0
3,898,341	+		CCNA_03730	0.53	-2.1
3,898,341	+		CCNA_03730	0.53	+1.4
3,898,349	-		CCNA_03730	0.54	+0.4
3,898,349	-		CCNA_03730	0.54	-0.1
3,898,349	-		CCNA_03730	0.54	+0.1
3,898,367	+				+0.4
3,898,370	-		CCNA_03730	0.57	-0.6
3,898,384	+		CCNA_03730	0.58	+2.4
3,898,412	+		CCNA_03730	0.61	-1.4
3,898,415	-		CCNA_03730	0.62	-0.0
3,898,422	-		CCNA_03730	0.63	+0.1
3,898,437	+		CCNA_03730	0.64	-0.5
3,898,445	-		CCNA_03730	0.65	+1.4
3,898,445	-		CCNA_03730	0.65	+0.2
3,898,461	-		CCNA_03730	0.67	+2.0
3,898,461	-		CCNA_03730	0.67	-0.1
3,898,491	+		CCNA_03730	0.70	+0.1
3,898,497	+		CCNA_03730	0.71	+0.2
3,898,557	-		CCNA_03730	0.78	-0.1
3,898,603	-		CCNA_03730	0.83	+0.7
3,898,657	+		CCNA_03730	0.89	+1.2
3,898,665	-				-0.8
3,898,686	+				-0.7
3,898,746	-				-0.7
3,898,772	+				-0.6