Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03700 and CCNA_03701 are separated by 81 nucleotides CCNA_03701 and CCNA_03702 are separated by 202 nucleotides CCNA_03702 and CCNA_03703 are separated by 148 nucleotides CCNA_03703 and CCNA_03704 are separated by 114 nucleotides
CCNA_03700: CCNA_03700 - large-conductance mechanosensitive channel, at 3,868,697 to 3,869,116
_03700
CCNA_03701: CCNA_03701 - integration host factor beta-subunit, at 3,869,198 to 3,869,488
_03701
CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400
_03702
CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190
_03703
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
Position (kb)
3869
3870
3871
3872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3868.692 kb on - strand at 3868.704 kb on + strand at 3868.742 kb on + strand, within CCNA_03700 at 3868.774 kb on + strand, within CCNA_03700 at 3868.806 kb on + strand, within CCNA_03700 at 3868.814 kb on - strand, within CCNA_03700 at 3868.883 kb on + strand, within CCNA_03700 at 3869.035 kb on - strand, within CCNA_03700 at 3869.060 kb on - strand, within CCNA_03700 at 3869.064 kb on - strand, within CCNA_03700 at 3869.070 kb on + strand, within CCNA_03700 at 3869.116 kb on + strand at 3869.124 kb on - strand at 3869.128 kb on + strand at 3869.143 kb on - strand at 3869.145 kb on + strand at 3869.151 kb on + strand at 3869.181 kb on - strand at 3869.192 kb on - strand at 3869.192 kb on - strand at 3869.244 kb on + strand, within CCNA_03701 at 3869.277 kb on + strand, within CCNA_03701 at 3869.319 kb on + strand, within CCNA_03701 at 3869.350 kb on + strand, within CCNA_03701 at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.473 kb on + strand at 3869.481 kb on - strand at 3869.481 kb on - strand at 3869.481 kb on - strand at 3869.689 kb on + strand at 3870.076 kb on - strand, within CCNA_03702 at 3870.244 kb on - strand, within CCNA_03702 at 3872.191 kb on + strand at 3872.191 kb on + strand at 3872.194 kb on - strand at 3872.199 kb on - strand at 3872.215 kb on + strand at 3872.225 kb on + strand at 3872.226 kb on + strand at 3872.233 kb on - strand at 3872.234 kb on - strand at 3872.240 kb on + strand at 3872.240 kb on + strand at 3872.245 kb on - strand at 3872.253 kb on - strand at 3872.271 kb on + strand at 3872.273 kb on - strand at 3872.278 kb on - strand at 3872.279 kb on - strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.303 kb on + strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.311 kb on - strand at 3872.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml remove 3,868,692 - +0.9 3,868,704 + -0.7 3,868,742 + CCNA_03700 0.11 +0.1 3,868,774 + CCNA_03700 0.18 +0.3 3,868,806 + CCNA_03700 0.26 -1.9 3,868,814 - CCNA_03700 0.28 +1.0 3,868,883 + CCNA_03700 0.44 -1.4 3,869,035 - CCNA_03700 0.80 +1.1 3,869,060 - CCNA_03700 0.86 +1.5 3,869,064 - CCNA_03700 0.87 +0.5 3,869,070 + CCNA_03700 0.89 -0.1 3,869,116 + +1.4 3,869,124 - +1.4 3,869,128 + +0.0 3,869,143 - +1.4 3,869,145 + -1.0 3,869,151 + +0.2 3,869,181 - +0.3 3,869,192 - +1.4 3,869,192 - +1.2 3,869,244 + CCNA_03701 0.16 +1.6 3,869,277 + CCNA_03701 0.27 -1.4 3,869,319 + CCNA_03701 0.42 -1.1 3,869,350 + CCNA_03701 0.52 +0.7 3,869,473 + +0.1 3,869,473 + +0.6 3,869,473 + -0.6 3,869,473 + +1.4 3,869,481 - +1.7 3,869,481 - +1.7 3,869,481 - +1.3 3,869,689 + -2.9 3,870,076 - CCNA_03702 0.23 +4.8 3,870,244 - CCNA_03702 0.32 +2.8 3,872,191 + +0.6 3,872,191 + -0.2 3,872,194 - -0.4 3,872,199 - +0.2 3,872,215 + +0.1 3,872,225 + +3.8 3,872,226 + -1.2 3,872,233 - +0.0 3,872,234 - +0.2 3,872,240 + +0.6 3,872,240 + +0.3 3,872,245 - +0.6 3,872,253 - +0.1 3,872,271 + -0.5 3,872,273 - +1.0 3,872,278 - +0.0 3,872,279 - +0.3 3,872,303 + +1.4 3,872,303 + -0.4 3,872,303 + -1.7 3,872,303 + -0.3 3,872,311 - +0.2 3,872,311 - +0.8 3,872,311 - +1.0 3,872,311 - -0.3 3,872,311 - +0.3 3,872,311 - -0.6 3,872,333 - +0.6
Or see this region's nucleotide sequence