Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02446

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
2,586,206	+		CCNA_02444	0.83	+0.2
2,586,206	+		CCNA_02444	0.83	-0.8
2,586,206	+		CCNA_02444	0.83	-1.5
2,586,206	+		CCNA_02444	0.83	+0.1
2,586,206	+		CCNA_02444	0.83	+0.0
2,586,206	+		CCNA_02444	0.83	+1.8
2,586,206	+		CCNA_02444	0.83	+0.0
2,586,206	+		CCNA_02444	0.83	+0.8
2,586,206	+		CCNA_02444	0.83	+0.1
2,586,214	-		CCNA_02444	0.84	-0.6
2,586,214	-		CCNA_02444	0.84	+2.8
2,586,214	-		CCNA_02444	0.84	-0.5
2,586,214	-		CCNA_02444	0.84	+1.0
2,586,259	+		CCNA_02444	0.88	-0.5
2,586,259	+		CCNA_02444	0.88	-2.4
2,586,348	-				-0.7
2,586,363	-				-3.4
2,586,368	-				+1.0
2,586,394	-				+1.1
2,586,407	+				+0.5
2,586,461	-				+0.5
2,586,480	+				+1.8
2,586,540	+		CCNA_02445	0.15	-1.7
2,586,546	+		CCNA_02445	0.15	-0.5
2,586,546	+		CCNA_02445	0.15	-0.2
2,586,547	+		CCNA_02445	0.16	+0.2
2,586,548	-		CCNA_02445	0.16	+0.0
2,586,554	-		CCNA_02445	0.17	+0.5
2,586,583	+		CCNA_02445	0.20	-1.5
2,586,637	+		CCNA_02445	0.28	+0.0
2,586,660	-		CCNA_02445	0.31	-0.2
2,586,684	+		CCNA_02445	0.34	-1.8
2,586,684	+		CCNA_02445	0.34	-1.2
2,586,691	+		CCNA_02445	0.35	+0.8
2,586,691	+		CCNA_02445	0.35	+0.0
2,586,692	-		CCNA_02445	0.35	-0.3
2,586,692	-		CCNA_02445	0.35	+1.8
2,586,699	-		CCNA_02445	0.36	-0.2
2,586,726	-		CCNA_02445	0.40	+0.8
2,586,728	+		CCNA_02445	0.40	-1.3
2,586,736	-		CCNA_02445	0.41	-0.5
2,586,752	-		CCNA_02445	0.43	-0.8
2,586,784	-		CCNA_02445	0.48	+0.2
2,586,784	-		CCNA_02445	0.48	-0.1
2,586,784	-		CCNA_02445	0.48	-0.1
2,586,788	+		CCNA_02445	0.48	+1.0
2,586,796	-		CCNA_02445	0.49	-1.0
2,586,819	+		CCNA_02445	0.52	+1.8
2,586,827	-		CCNA_02445	0.54	+1.4
2,586,827	-		CCNA_02445	0.54	-1.5
2,586,827	-		CCNA_02445	0.54	-2.3
2,586,850	+		CCNA_02445	0.57	+1.4
2,586,914	+		CCNA_02445	0.65	+1.2
2,586,961	-		CCNA_02445	0.72	+0.6
2,586,964	+		CCNA_02445	0.72	-0.5
2,587,025	-		CCNA_02445	0.80	+1.1
2,587,030	+		CCNA_02445	0.81	-0.7
2,587,068	-		CCNA_02445	0.86	-2.0
2,587,102	+				-1.8
2,587,102	+				-0.5
2,587,117	+				+1.1
2,587,145	+				+0.9
2,587,172	-				-0.3
2,587,231	-				+1.4
2,587,333	-		CCNA_02446	0.14	-1.0
2,587,341	+		CCNA_02446	0.15	+1.8
2,587,341	+		CCNA_02446	0.15	-0.2
2,587,341	+		CCNA_02446	0.15	-0.5
2,587,349	-		CCNA_02446	0.16	-0.8
2,587,349	-		CCNA_02446	0.16	-0.8
2,587,385	-		CCNA_02446	0.19	+0.0
2,587,400	-		CCNA_02446	0.20	-1.0
2,587,400	-		CCNA_02446	0.20	+3.4
2,587,445	+		CCNA_02446	0.24	-1.0
2,587,478	-		CCNA_02446	0.27	-2.0
2,587,533	-		CCNA_02446	0.32	-0.9
2,587,543	-		CCNA_02446	0.32	+0.7
2,587,583	-		CCNA_02446	0.36	+0.0
2,587,583	-		CCNA_02446	0.36	-1.8
2,587,617	-		CCNA_02446	0.39	-0.9
2,587,624	+		CCNA_02446	0.39	+0.5
2,587,635	+		CCNA_02446	0.40	-1.9
2,587,635	+		CCNA_02446	0.40	-1.5
2,587,635	+		CCNA_02446	0.40	+1.8
2,587,635	+		CCNA_02446	0.40	-0.5
2,587,635	+		CCNA_02446	0.40	-0.2
2,587,636	+		CCNA_02446	0.40	-0.2
2,587,636	-		CCNA_02446	0.40	-0.1
2,587,636	-		CCNA_02446	0.40	-0.2
2,587,643	-		CCNA_02446	0.41	-0.0
2,587,643	-		CCNA_02446	0.41	+0.2
2,587,643	-		CCNA_02446	0.41	-0.0
2,587,643	-		CCNA_02446	0.41	+0.7
2,587,643	-		CCNA_02446	0.41	-1.7
2,587,643	-		CCNA_02446	0.41	-2.0
2,587,643	-		CCNA_02446	0.41	-1.3
2,587,753	+		CCNA_02446	0.50	-1.3
2,587,786	-		CCNA_02446	0.53	-0.5
2,587,836	+		CCNA_02446	0.58	+0.8
2,587,844	-		CCNA_02446	0.58	-0.4
2,587,844	-		CCNA_02446	0.58	+0.8
2,587,844	-		CCNA_02446	0.58	-2.3
2,587,844	-		CCNA_02446	0.58	-2.6
2,587,869	+		CCNA_02446	0.60	+2.4
2,587,869	+		CCNA_02446	0.60	+0.2
2,587,869	+		CCNA_02446	0.60	-1.0
2,587,879	+		CCNA_02446	0.61	-0.8
2,587,887	-		CCNA_02446	0.62	-0.2
2,587,942	+		CCNA_02446	0.67	-2.3
2,588,018	-		CCNA_02446	0.73	-0.9
2,588,029	-		CCNA_02446	0.74	+0.2
2,588,038	-		CCNA_02446	0.75	-0.3
2,588,055	+		CCNA_02446	0.76	-1.2
2,588,063	-		CCNA_02446	0.77	+0.2
2,588,063	-		CCNA_02446	0.77	+0.8
2,588,063	-		CCNA_02446	0.77	-1.1
2,588,093	-		CCNA_02446	0.80	-0.4
2,588,141	-		CCNA_02446	0.84	-0.5
2,588,143	+		CCNA_02446	0.84	-1.2
2,588,143	+		CCNA_02446	0.84	-1.6
2,588,143	+		CCNA_02446	0.84	-1.6
2,588,143	+		CCNA_02446	0.84	+0.2
2,588,143	+		CCNA_02446	0.84	+0.8
2,588,143	+		CCNA_02446	0.84	-1.0
2,588,143	+		CCNA_02446	0.84	+1.8
2,588,143	+		CCNA_02446	0.84	+0.8
2,588,143	+		CCNA_02446	0.84	-0.2
2,588,143	+		CCNA_02446	0.84	+0.8
2,588,143	+		CCNA_02446	0.84	-0.2
2,588,143	+		CCNA_02446	0.84	+1.8
2,588,143	+		CCNA_02446	0.84	-1.0
2,588,143	+		CCNA_02446	0.84	+0.8
2,588,151	-		CCNA_02446	0.85	-1.4
2,588,151	-		CCNA_02446	0.85	-0.3
2,588,151	-		CCNA_02446	0.85	-0.8
2,588,151	-		CCNA_02446	0.85	-2.5
2,588,151	-		CCNA_02446	0.85	-1.1
2,588,151	-		CCNA_02446	0.85	-1.3
2,588,151	-		CCNA_02446	0.85	-1.0
2,588,151	-		CCNA_02446	0.85	+1.1
2,588,151	-		CCNA_02446	0.85	+0.5
2,588,151	-		CCNA_02446	0.85	-0.2
2,588,151	-		CCNA_02446	0.85	-1.3
2,588,151	-		CCNA_02446	0.85	-1.2
2,588,151	-		CCNA_02446	0.85	-1.4
2,588,151	-		CCNA_02446	0.85	-1.0
2,588,151	-		CCNA_02446	0.85	-2.9
2,588,151	-		CCNA_02446	0.85	+0.3
2,588,151	-		CCNA_02446	0.85	-0.3
2,588,151	-		CCNA_02446	0.85	-0.3
2,588,151	-		CCNA_02446	0.85	+0.2
2,588,151	-		CCNA_02446	0.85	-1.6
2,588,151	-		CCNA_02446	0.85	+0.0
2,588,151	-		CCNA_02446	0.85	-0.2
2,588,151	-		CCNA_02446	0.85	-2.5
2,588,151	-		CCNA_02446	0.85	+1.6
2,588,151	-		CCNA_02446	0.85	-0.0
2,588,151	-		CCNA_02446	0.85	+1.2
2,588,151	-		CCNA_02446	0.85	-0.5
2,588,151	-		CCNA_02446	0.85	-0.5
2,588,151	-		CCNA_02446	0.85	-0.9
2,588,156	-		CCNA_02446	0.85	-0.9
2,588,159	+		CCNA_02446	0.85	-0.2
2,588,189	+		CCNA_02446	0.88	+1.8
2,588,190	+		CCNA_02446	0.88	-1.9
2,588,198	-		CCNA_02446	0.89	-2.6
2,588,221	-				-0.4
2,588,240	-				-0.7
2,588,263	+				-1.0
2,588,298	-				-0.2
2,588,355	+				+0.3
2,588,382	-				+2.2
2,588,411	+		CCNA_02447	0.11	-0.7
2,588,411	+		CCNA_02447	0.11	+0.5
2,588,495	-		CCNA_02447	0.22	+2.8
2,588,508	+		CCNA_02447	0.24	+0.2
2,588,508	+		CCNA_02447	0.24	+1.7
2,588,508	+		CCNA_02447	0.24	+0.8
2,588,516	-		CCNA_02447	0.25	+2.9
2,588,516	-		CCNA_02447	0.25	+2.4
2,588,516	-		CCNA_02447	0.25	+2.6
2,588,525	+		CCNA_02447	0.26	+1.8
2,588,526	+		CCNA_02447	0.26	+0.5
2,588,538	-		CCNA_02447	0.28	+1.7
2,588,543	-		CCNA_02447	0.28	+2.1
2,588,557	-		CCNA_02447	0.30	+2.0
2,588,559	+		CCNA_02447	0.30	+0.3
2,588,567	-		CCNA_02447	0.31	+2.5
2,588,569	+		CCNA_02447	0.32	+3.6
2,588,576	-		CCNA_02447	0.33	+2.3
2,588,605	+		CCNA_02447	0.36	+0.1
2,588,613	-		CCNA_02447	0.37	+2.5
2,588,613	-		CCNA_02447	0.37	+2.2
2,588,634	+		CCNA_02447	0.40	+0.8
2,588,640	+		CCNA_02447	0.41	+1.6
2,588,640	-		CCNA_02447	0.41	+2.3
2,588,690	+		CCNA_02447	0.48	+0.4
2,588,690	+		CCNA_02447	0.48	-0.2
2,588,690	+		CCNA_02447	0.48	+0.3
2,588,698	-		CCNA_02447	0.49	+2.1
2,588,704	-		CCNA_02447	0.49	+1.8
2,588,707	+		CCNA_02447	0.50	+0.6
2,588,710	-		CCNA_02447	0.50	+2.3
2,588,738	-		CCNA_02447	0.54	+2.3
2,588,778	-		CCNA_02447	0.59	+2.7
2,588,798	+				+1.3
2,588,798	+		CCNA_02447	0.62	+0.6
2,588,798	+		CCNA_02447	0.62	+0.3
2,588,798	+		CCNA_02447	0.62	+0.5
2,588,798	+		CCNA_02447	0.62	+0.1
2,588,806	-		CCNA_02447	0.63	+2.2
2,588,816	-		CCNA_02447	0.64	+2.3
2,588,837	+		CCNA_02447	0.67	+0.8
2,588,837	+		CCNA_02447	0.67	+0.9
2,588,845	-		CCNA_02447	0.68	+1.9
2,588,857	+		CCNA_02447	0.70	+2.3
2,588,863	+		CCNA_02447	0.70	+0.2
2,588,865	-		CCNA_02447	0.71	+2.2
2,588,871	-		CCNA_02447	0.71	+2.4
2,588,900	+		CCNA_02447	0.75	+0.5
2,588,933	+		CCNA_02447	0.80	+0.1
2,588,948	+		CCNA_02447	0.82	+2.8
2,588,954	+		CCNA_02447	0.82	-0.0
2,588,956	-		CCNA_02447	0.83	+2.2
2,588,959	+		CCNA_02447	0.83	+2.7
2,588,988	+		CCNA_02447	0.87	-0.6
2,589,008	+		CCNA_02447	0.89	-2.6
2,589,008	+		CCNA_02447	0.89	-1.7
2,589,009	-		CCNA_02447	0.90	+2.2
2,589,018	+				-2.4
2,589,025	+				+1.1
2,589,037	+				+1.2
2,589,037	+				-0.4
2,589,037	+				+0.1
2,589,037	+				+0.1
2,589,045	-				+2.3
2,589,045	-				+2.4
2,589,045	-				+2.0
2,589,045	-				+2.1
2,589,045	-				+1.8
2,589,045	-				+2.1
2,589,050	+				-0.6
2,589,050	+				+0.3
2,589,050	+				+1.8
2,589,050	+				+0.7
2,589,063	-				+2.7
2,589,069	-				+2.6
2,589,070	-				+2.2
2,589,070	-				+2.3
2,589,085	+				+1.8
2,589,115	-				+1.3
2,589,115	-				+1.2
2,589,166	+				+1.2
2,589,171	+				+0.0
2,589,202	-		CCNA_02448	0.14	+3.6
2,589,231	+		CCNA_02448	0.18	+1.7
2,589,245	+		CCNA_02448	0.20	+0.5
2,589,248	-		CCNA_02448	0.20	+4.3
2,589,253	-		CCNA_02448	0.21	+4.1
2,589,277	+		CCNA_02448	0.25	+1.5
2,589,303	+		CCNA_02448	0.29	+0.5
2,589,311	-		CCNA_02448	0.30	+4.2
2,589,318	-		CCNA_02448	0.31	+4.1