Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00852

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00851 and CCNA_00852 are separated by 167 nucleotidesCCNA_00852 and CCNA_00853 overlap by 4 nucleotidesCCNA_00853 and CCNA_00854 are separated by 129 nucleotides CCNA_00851: CCNA_00851 - periplasmic multidrug efflux lipoprotein precursor, at 926,304 to 927,470 _00851 CCNA_00852: CCNA_00852 - TetR family transcriptional regulator, at 927,638 to 928,252 _00852 CCNA_00853: CCNA_00853 - 3-isopropylmalate dehydrogenase, at 928,249 to 929,016 _00853 CCNA_00854: CCNA_00854 - metallo-beta-lactamase protein, at 929,146 to 930,738 _00854 Position (kb) 927 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 926.692 kb on - strand, within CCNA_00851at 926.709 kb on + strand, within CCNA_00851at 926.734 kb on - strand, within CCNA_00851at 926.750 kb on - strand, within CCNA_00851at 926.775 kb on + strand, within CCNA_00851at 926.808 kb on + strand, within CCNA_00851at 926.809 kb on + strand, within CCNA_00851at 926.809 kb on + strand, within CCNA_00851at 926.813 kb on + strand, within CCNA_00851at 926.816 kb on - strand, within CCNA_00851at 926.819 kb on + strand, within CCNA_00851at 926.824 kb on + strand, within CCNA_00851at 926.824 kb on + strand, within CCNA_00851at 926.824 kb on + strand, within CCNA_00851at 926.824 kb on + strand, within CCNA_00851at 926.832 kb on - strand, within CCNA_00851at 926.832 kb on - strand, within CCNA_00851at 926.832 kb on - strand, within CCNA_00851at 926.841 kb on + strand, within CCNA_00851at 926.841 kb on + strand, within CCNA_00851at 926.841 kb on + strand, within CCNA_00851at 926.841 kb on + strand, within CCNA_00851at 926.841 kb on + strand, within CCNA_00851at 926.848 kb on + strandat 926.849 kb on - strand, within CCNA_00851at 926.849 kb on - strand, within CCNA_00851at 926.849 kb on - strand, within CCNA_00851at 926.849 kb on - strand, within CCNA_00851at 926.849 kb on - strand, within CCNA_00851at 926.849 kb on - strand, within CCNA_00851at 926.861 kb on - strand, within CCNA_00851at 926.861 kb on - strand, within CCNA_00851at 926.875 kb on + strand, within CCNA_00851at 926.875 kb on + strand, within CCNA_00851at 926.904 kb on + strand, within CCNA_00851at 926.904 kb on + strand, within CCNA_00851at 926.904 kb on + strand, within CCNA_00851at 926.907 kb on - strand, within CCNA_00851at 926.912 kb on - strand, within CCNA_00851at 926.912 kb on - strand, within CCNA_00851at 926.966 kb on - strand, within CCNA_00851at 926.966 kb on - strand, within CCNA_00851at 927.001 kb on + strand, within CCNA_00851at 927.001 kb on + strand, within CCNA_00851at 927.009 kb on + strand, within CCNA_00851at 927.009 kb on + strand, within CCNA_00851at 927.011 kb on + strand, within CCNA_00851at 927.011 kb on + strand, within CCNA_00851at 927.024 kb on - strand, within CCNA_00851at 927.042 kb on - strand, within CCNA_00851at 927.060 kb on + strand, within CCNA_00851at 927.061 kb on + strand, within CCNA_00851at 927.065 kb on + strand, within CCNA_00851at 927.074 kb on - strand, within CCNA_00851at 927.075 kb on - strand, within CCNA_00851at 927.079 kb on - strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.088 kb on + strand, within CCNA_00851at 927.096 kb on - strand, within CCNA_00851at 927.096 kb on - strand, within CCNA_00851at 927.096 kb on - strand, within CCNA_00851at 927.121 kb on + strand, within CCNA_00851at 927.122 kb on - strand, within CCNA_00851at 927.123 kb on - strand, within CCNA_00851at 927.123 kb on - strand, within CCNA_00851at 927.129 kb on - strand, within CCNA_00851at 927.147 kb on + strand, within CCNA_00851at 927.147 kb on + strand, within CCNA_00851at 927.147 kb on + strand, within CCNA_00851at 927.147 kb on + strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.155 kb on - strand, within CCNA_00851at 927.178 kb on + strand, within CCNA_00851at 927.186 kb on - strand, within CCNA_00851at 927.189 kb on + strand, within CCNA_00851at 927.192 kb on - strand, within CCNA_00851at 927.217 kb on + strand, within CCNA_00851at 927.259 kb on - strand, within CCNA_00851at 927.307 kb on - strand, within CCNA_00851at 927.307 kb on - strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.313 kb on + strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.361 kb on + strandat 927.369 kb on - strandat 927.372 kb on + strandat 927.373 kb on - strandat 927.397 kb on - strandat 927.410 kb on - strandat 927.471 kb on + strandat 927.485 kb on + strandat 927.502 kb on + strandat 927.508 kb on + strandat 927.508 kb on + strandat 927.510 kb on - strandat 927.566 kb on - strandat 927.643 kb on + strandat 927.687 kb on + strandat 927.855 kb on + strand, within CCNA_00852at 927.988 kb on + strand, within CCNA_00852at 928.064 kb on + strand, within CCNA_00852at 928.176 kb on + strand, within CCNA_00852at 928.176 kb on + strand, within CCNA_00852at 928.241 kb on + strandat 928.246 kb on + strandat 928.254 kb on - strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.266 kb on + strandat 928.266 kb on + strandat 928.274 kb on - strandat 928.287 kb on - strandat 928.299 kb on - strandat 928.299 kb on - strandat 928.337 kb on - strand, within CCNA_00853at 928.412 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.461 kb on - strand, within CCNA_00853at 928.468 kb on - strand, within CCNA_00853at 928.470 kb on + strand, within CCNA_00853at 928.507 kb on - strand, within CCNA_00853at 928.525 kb on + strand, within CCNA_00853at 928.535 kb on + strand, within CCNA_00853at 928.572 kb on + strand, within CCNA_00853at 928.580 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.670 kb on + strand, within CCNA_00853at 928.688 kb on - strand, within CCNA_00853at 928.699 kb on + strand, within CCNA_00853at 928.719 kb on + strand, within CCNA_00853at 928.785 kb on + strand, within CCNA_00853at 928.795 kb on - strand, within CCNA_00853at 928.799 kb on - strand, within CCNA_00853at 928.824 kb on - strand, within CCNA_00853at 928.837 kb on + strand, within CCNA_00853at 928.860 kb on - strand, within CCNA_00853at 928.863 kb on + strand, within CCNA_00853at 928.897 kb on - strand, within CCNA_00853at 928.900 kb on + strand, within CCNA_00853at 928.996 kb on + strandat 928.996 kb on + strandat 929.002 kb on - strandat 929.002 kb on - strandat 929.041 kb on - strandat 929.070 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.078 kb on - strandat 929.078 kb on - strandat 929.084 kb on - strandat 929.102 kb on + strandat 929.107 kb on + strandat 929.128 kb on - strandat 929.196 kb on - strandat 929.217 kb on + strandat 929.217 kb on + strandat 929.222 kb on + strandat 929.225 kb on - strandat 929.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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926,692 - CCNA_00851 0.33 -2.4
926,709 + CCNA_00851 0.35 -1.0
926,734 - CCNA_00851 0.37 -1.8
926,750 - CCNA_00851 0.38 -0.2
926,775 + CCNA_00851 0.40 +1.8
926,808 + CCNA_00851 0.43 -2.0
926,809 + CCNA_00851 0.43 -0.1
926,809 + CCNA_00851 0.43 -1.5
926,813 + CCNA_00851 0.44 -0.2
926,816 - CCNA_00851 0.44 -0.7
926,819 + CCNA_00851 0.44 -1.0
926,824 + CCNA_00851 0.45 -1.2
926,824 + CCNA_00851 0.45 -1.6
926,824 + CCNA_00851 0.45 -0.5
926,824 + CCNA_00851 0.45 -1.5
926,832 - CCNA_00851 0.45 -1.6
926,832 - CCNA_00851 0.45 -2.9
926,832 - CCNA_00851 0.45 +0.2
926,841 + CCNA_00851 0.46 -0.5
926,841 + CCNA_00851 0.46 +0.5
926,841 + CCNA_00851 0.46 -0.2
926,841 + CCNA_00851 0.46 -2.4
926,841 + CCNA_00851 0.46 +0.8
926,848 + +3.4
926,849 - CCNA_00851 0.47 -2.6
926,849 - CCNA_00851 0.47 -2.1
926,849 - CCNA_00851 0.47 -1.4
926,849 - CCNA_00851 0.47 -2.2
926,849 - CCNA_00851 0.47 -2.6
926,849 - CCNA_00851 0.47 +0.2
926,861 - CCNA_00851 0.48 -3.0
926,861 - CCNA_00851 0.48 -2.5
926,875 + CCNA_00851 0.49 -1.4
926,875 + CCNA_00851 0.49 -0.5
926,904 + CCNA_00851 0.51 -1.0
926,904 + CCNA_00851 0.51 -0.2
926,904 + CCNA_00851 0.51 -0.2
926,907 - CCNA_00851 0.52 -1.1
926,912 - CCNA_00851 0.52 -1.2
926,912 - CCNA_00851 0.52 -2.7
926,966 - CCNA_00851 0.57 +0.2
926,966 - CCNA_00851 0.57 -0.5
927,001 + CCNA_00851 0.60 -1.5
927,001 + CCNA_00851 0.60 -0.0
927,009 + CCNA_00851 0.60 -1.4
927,009 + CCNA_00851 0.60 -0.5
927,011 + CCNA_00851 0.61 +0.8
927,011 + CCNA_00851 0.61 -2.5
927,024 - CCNA_00851 0.62 -1.8
927,042 - CCNA_00851 0.63 +0.2
927,060 + CCNA_00851 0.65 -1.6
927,061 + CCNA_00851 0.65 -1.9
927,065 + CCNA_00851 0.65 +0.0
927,074 - CCNA_00851 0.66 -0.2
927,075 - CCNA_00851 0.66 -1.4
927,079 - CCNA_00851 0.66 +1.8
927,088 + CCNA_00851 0.67 +1.8
927,088 + CCNA_00851 0.67 -1.0
927,088 + CCNA_00851 0.67 -1.0
927,088 + CCNA_00851 0.67 -2.0
927,088 + CCNA_00851 0.67 -2.4
927,088 + CCNA_00851 0.67 +1.2
927,088 + CCNA_00851 0.67 -1.2
927,096 - CCNA_00851 0.68 -1.6
927,096 - CCNA_00851 0.68 -1.9
927,096 - CCNA_00851 0.68 -1.5
927,121 + CCNA_00851 0.70 -0.5
927,122 - CCNA_00851 0.70 -1.4
927,123 - CCNA_00851 0.70 -1.2
927,123 - CCNA_00851 0.70 -2.5
927,129 - CCNA_00851 0.71 -0.2
927,147 + CCNA_00851 0.72 -2.5
927,147 + CCNA_00851 0.72 +0.2
927,147 + CCNA_00851 0.72 -1.9
927,147 + CCNA_00851 0.72 -1.0
927,155 - CCNA_00851 0.73 -0.2
927,155 - CCNA_00851 0.73 -2.4
927,155 - CCNA_00851 0.73 -0.8
927,155 - CCNA_00851 0.73 +1.8
927,155 - CCNA_00851 0.73 -3.4
927,155 - CCNA_00851 0.73 -1.4
927,155 - CCNA_00851 0.73 -0.2
927,178 + CCNA_00851 0.75 -1.5
927,186 - CCNA_00851 0.76 -0.1
927,189 + CCNA_00851 0.76 +0.2
927,192 - CCNA_00851 0.76 -1.8
927,217 + CCNA_00851 0.78 -2.0
927,259 - CCNA_00851 0.82 -1.9
927,307 - CCNA_00851 0.86 +1.8
927,307 - CCNA_00851 0.86 +0.2
927,311 + CCNA_00851 0.86 -1.2
927,311 + CCNA_00851 0.86 -1.3
927,311 + CCNA_00851 0.86 -1.8
927,311 + CCNA_00851 0.86 -0.8
927,313 + CCNA_00851 0.86 +1.2
927,319 - CCNA_00851 0.87 -2.6
927,319 - CCNA_00851 0.87 -1.9
927,319 - CCNA_00851 0.87 -2.4
927,319 - CCNA_00851 0.87 -2.0
927,319 - CCNA_00851 0.87 -0.7
927,361 + -0.5
927,369 - -1.4
927,372 + -2.1
927,373 - -0.3
927,397 - -3.0
927,410 - -0.5
927,471 + -1.2
927,485 + +1.8
927,502 + -1.0
927,508 + +0.8
927,508 + -0.8
927,510 - +1.2
927,566 - +3.0
927,643 + +2.4
927,687 + +3.4
927,855 + CCNA_00852 0.35 +5.4
927,988 + CCNA_00852 0.57 +0.8
928,064 + CCNA_00852 0.69 +5.7
928,176 + CCNA_00852 0.87 +4.7
928,176 + CCNA_00852 0.87 +4.7
928,241 + +4.5
928,246 + -0.7
928,254 - +0.8
928,256 + +0.6
928,256 + +1.7
928,256 + +2.0
928,266 + +2.0
928,266 + +1.7
928,274 - +0.5
928,287 - -0.0
928,299 - +0.0
928,299 - +1.9
928,337 - CCNA_00853 0.11 +0.6
928,412 - CCNA_00853 0.21 -2.8
928,460 - CCNA_00853 0.27 -1.4
928,460 - CCNA_00853 0.27 -1.6
928,461 - CCNA_00853 0.28 -1.6
928,468 - CCNA_00853 0.29 +0.0
928,470 + CCNA_00853 0.29 -0.7
928,507 - CCNA_00853 0.34 +0.3
928,525 + CCNA_00853 0.36 -1.5
928,535 + CCNA_00853 0.37 -0.4
928,572 + CCNA_00853 0.42 +0.2
928,580 - CCNA_00853 0.43 -0.5
928,622 - CCNA_00853 0.49 +0.8
928,670 + CCNA_00853 0.55 -2.1
928,688 - CCNA_00853 0.57 +1.8
928,699 + CCNA_00853 0.59 -0.2
928,719 + CCNA_00853 0.61 -0.3
928,785 + CCNA_00853 0.70 +1.3
928,795 - CCNA_00853 0.71 -0.8
928,799 - CCNA_00853 0.72 -0.6
928,824 - CCNA_00853 0.75 +0.4
928,837 + CCNA_00853 0.77 -2.6
928,860 - CCNA_00853 0.80 -0.2
928,863 + CCNA_00853 0.80 -1.0
928,897 - CCNA_00853 0.84 -0.1
928,900 + CCNA_00853 0.85 +0.2
928,996 + -2.1
928,996 + -0.8
929,002 - -0.4
929,002 - -0.1
929,041 - +0.8
929,070 + +0.4
929,076 + +1.4
929,076 + +1.3
929,076 + +1.7
929,076 + +1.4
929,078 - -0.5
929,078 - -0.5
929,084 - +0.8
929,102 + -2.7
929,107 + -0.8
929,128 - -0.2
929,196 - +0.2
929,217 + -0.7
929,217 + -0.1
929,222 + -1.1
929,225 - -0.6
929,230 - -3.2

Or see this region's nucleotide sequence