Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00027

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00026 and CCNA_00027 are separated by 98 nucleotidesCCNA_00027 and CCNA_00028 are separated by 145 nucleotides CCNA_00026: CCNA_00026 - PAS-family sensor histidine kinase, at 26,701 to 29,403 _00026 CCNA_00027: CCNA_00027 - 2OG-Fe(II) oxygenase, at 29,502 to 30,191 _00027 CCNA_00028: CCNA_00028 - TonB-dependent receptor, at 30,337 to 32,658 _00028 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2 3at 28.518 kb on - strand, within CCNA_00026at 28.525 kb on + strand, within CCNA_00026at 28.566 kb on - strand, within CCNA_00026at 28.652 kb on + strand, within CCNA_00026at 28.657 kb on + strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.714 kb on - strand, within CCNA_00026at 28.716 kb on - strand, within CCNA_00026at 28.716 kb on - strand, within CCNA_00026at 28.723 kb on - strand, within CCNA_00026at 28.725 kb on + strand, within CCNA_00026at 28.725 kb on + strand, within CCNA_00026at 28.761 kb on + strand, within CCNA_00026at 28.769 kb on - strand, within CCNA_00026at 28.798 kb on + strand, within CCNA_00026at 28.798 kb on + strand, within CCNA_00026at 28.808 kb on + strand, within CCNA_00026at 28.828 kb on + strand, within CCNA_00026at 28.852 kb on - strand, within CCNA_00026at 28.854 kb on + strand, within CCNA_00026at 28.860 kb on - strand, within CCNA_00026at 28.862 kb on + strand, within CCNA_00026at 28.873 kb on - strand, within CCNA_00026at 28.883 kb on + strand, within CCNA_00026at 28.908 kb on - strand, within CCNA_00026at 28.953 kb on - strand, within CCNA_00026at 28.978 kb on + strand, within CCNA_00026at 28.986 kb on - strand, within CCNA_00026at 29.025 kb on - strand, within CCNA_00026at 29.043 kb on - strand, within CCNA_00026at 29.074 kb on - strand, within CCNA_00026at 29.168 kb on + strandat 29.168 kb on + strandat 29.168 kb on + strandat 29.186 kb on - strandat 29.203 kb on - strandat 29.212 kb on - strandat 29.248 kb on + strandat 29.282 kb on + strandat 29.300 kb on - strandat 29.311 kb on - strandat 29.345 kb on + strandat 29.345 kb on + strandat 29.345 kb on + strandat 29.353 kb on - strandat 29.449 kb on - strandat 29.471 kb on - strandat 29.508 kb on - strandat 29.586 kb on - strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.841 kb on - strand, within CCNA_00027at 30.037 kb on - strand, within CCNA_00027at 30.189 kb on - strandat 30.251 kb on + strandat 30.284 kb on + strandat 30.292 kb on - strandat 30.294 kb on + strandat 30.302 kb on - strandat 30.312 kb on + strandat 30.320 kb on - strandat 30.322 kb on + strandat 30.322 kb on + strandat 30.322 kb on + strandat 30.330 kb on - strandat 30.330 kb on - strandat 30.330 kb on - strandat 30.330 kb on - strandat 30.330 kb on - strandat 30.335 kb on + strandat 30.651 kb on - strandat 30.862 kb on - strandat 30.862 kb on - strand, within CCNA_00028at 30.939 kb on - strand, within CCNA_00028at 30.961 kb on - strand, within CCNA_00028at 30.988 kb on - strand, within CCNA_00028

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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28,518 - CCNA_00026 0.67 +0.4
28,525 + CCNA_00026 0.67 -2.7
28,566 - CCNA_00026 0.69 -0.1
28,652 + CCNA_00026 0.72 -0.1
28,657 + CCNA_00026 0.72 +1.2
28,702 - CCNA_00026 0.74 +0.6
28,702 - CCNA_00026 0.74 +0.6
28,714 - CCNA_00026 0.74 -0.8
28,716 - CCNA_00026 0.75 -0.3
28,716 - CCNA_00026 0.75 -2.1
28,723 - CCNA_00026 0.75 -0.7
28,725 + CCNA_00026 0.75 -0.8
28,725 + CCNA_00026 0.75 +0.4
28,761 + CCNA_00026 0.76 -0.7
28,769 - CCNA_00026 0.77 -1.4
28,798 + CCNA_00026 0.78 +1.6
28,798 + CCNA_00026 0.78 -1.0
28,808 + CCNA_00026 0.78 +1.6
28,828 + CCNA_00026 0.79 +2.2
28,852 - CCNA_00026 0.80 -1.4
28,854 + CCNA_00026 0.80 -2.1
28,860 - CCNA_00026 0.80 +0.7
28,862 + CCNA_00026 0.80 +0.6
28,873 - CCNA_00026 0.80 +1.9
28,883 + CCNA_00026 0.81 -1.3
28,908 - CCNA_00026 0.82 +0.6
28,953 - CCNA_00026 0.83 +0.7
28,978 + CCNA_00026 0.84 +0.2
28,986 - CCNA_00026 0.85 +1.0
29,025 - CCNA_00026 0.86 -1.0
29,043 - CCNA_00026 0.87 +0.6
29,074 - CCNA_00026 0.88 -1.2
29,168 + -1.2
29,168 + -1.2
29,168 + +0.4
29,186 - +1.6
29,203 - -0.4
29,212 - -0.4
29,248 + -1.0
29,282 + -2.0
29,300 - -0.8
29,311 - +1.6
29,345 + -1.8
29,345 + +1.0
29,345 + -1.0
29,353 - -0.0
29,449 - -0.4
29,471 - +1.7
29,508 - -1.0
29,586 - CCNA_00027 0.12 +1.7
29,833 + CCNA_00027 0.48 +2.6
29,841 - CCNA_00027 0.49 +2.7
30,037 - CCNA_00027 0.78 +2.4
30,189 - +0.4
30,251 + -0.0
30,284 + +0.1
30,292 - +0.5
30,294 + +1.0
30,302 - +0.7
30,312 + -2.6
30,320 - +2.0
30,322 + -0.6
30,322 + -2.2
30,322 + -2.5
30,330 - +1.5
30,330 - +1.4
30,330 - +1.4
30,330 - +0.9
30,330 - +1.8
30,335 + -2.1
30,651 - +1.6
30,862 - +2.9
30,862 - CCNA_00028 0.23 +3.7
30,939 - CCNA_00028 0.26 +1.1
30,961 - CCNA_00028 0.27 +2.3
30,988 - CCNA_00028 0.28 +1.6

Or see this region's nucleotide sequence