Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32570 and BPHYT_RS32575 are separated by 314 nucleotides BPHYT_RS32575 and BPHYT_RS32580 are separated by 68 nucleotides BPHYT_RS32580 and BPHYT_RS32585 are separated by 17 nucleotides BPHYT_RS32585 and BPHYT_RS32590 are separated by 800 nucleotides
BPHYT_RS32570: BPHYT_RS32570 - 23S ribosomal RNA, at 2,876,210 to 2,879,112
_RS32570
BPHYT_RS32575: BPHYT_RS32575 - tRNA-Ala, at 2,879,427 to 2,879,502
_RS32575
BPHYT_RS32580: BPHYT_RS32580 - tRNA-Ile, at 2,879,571 to 2,879,647
_RS32580
BPHYT_RS32585: BPHYT_RS32585 - 16S ribosomal RNA, at 2,879,665 to 2,881,259
_RS32585
BPHYT_RS32590: BPHYT_RS32590 - RNA polymerase sigma factor RpoD, at 2,882,060 to 2,884,057
_RS32590
Position (kb)
2879
2880
2881
2882 Strain fitness (log2 ratio)
-1
0
1 at 2881.664 kb on + strand at 2881.665 kb on - strand at 2881.666 kb on + strand at 2881.666 kb on + strand at 2881.667 kb on - strand at 2881.668 kb on + strand at 2881.668 kb on + strand at 2881.668 kb on + strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.669 kb on - strand at 2881.670 kb on + strand at 2881.670 kb on + strand at 2881.670 kb on + strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.671 kb on - strand at 2881.723 kb on + strand at 2881.724 kb on - strand at 2881.724 kb on - strand at 2881.726 kb on - strand at 2881.762 kb on + strand at 2881.763 kb on - strand at 2881.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 2,881,664 + +0.6 2,881,665 - +0.2 2,881,666 + +0.2 2,881,666 + -0.5 2,881,667 - -0.2 2,881,668 + -0.1 2,881,668 + -0.2 2,881,668 + +0.0 2,881,669 - +0.0 2,881,669 - -0.4 2,881,669 - +1.0 2,881,669 - +0.7 2,881,670 + +0.6 2,881,670 + +0.0 2,881,670 + +0.4 2,881,671 - +0.3 2,881,671 - +0.4 2,881,671 - -0.1 2,881,671 - +0.1 2,881,671 - -0.0 2,881,723 + +0.4 2,881,724 - +1.0 2,881,724 - +0.4 2,881,726 - -0.1 2,881,762 + +0.6 2,881,763 - +0.3 2,881,763 - +0.0
Or see this region's nucleotide sequence